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The map label for this gene is psbO [H]

Identifier: 78778616

GI number: 78778616

Start: 223696

End: 224490

Strand: Reverse

Name: psbO [H]

Synonym: PMT9312_0230

Alternate gene names: 78778616

Gene position: 224490-223696 (Counterclockwise)

Preceding gene: 78778617

Following gene: 78778615

Centisome position: 13.13

GC content: 36.1

Gene sequence:

>795_bases
ATGAGAATTCGTTCTTTCTTAGCTTTTGTTATTTCAATTTGCATAACTTTTGCTTTCGTACCTGTGGAAACATTTGCTTT
TTCTGAAAGAGGAAATGCACAATTCACAGATGTTGTTAACACTGGGAAAGCTAATGATTGTCCTACATTAGACTCATCTC
TTGTCGGATCAATATCCATAGGGAATGGAGATACCCTTAAAGGAATATGCATGCATCCAACTGAAGTTTATGTCAAAGTG
CCAGGGACGAAAAGAAAAGCTGCAGAATTTGTTTCTACAAAAATTATTAGTCCCAGAAATAACACAACAGTGACCGAAGT
TTATGGAGATATAGATAAAGGCACTTTCACCGAAAAAGGTGGAATTGACTTTCAACTTATTACTGTCTTAACTCCTGGAG
GCTTAGAAGTACCATTTGCATTCTCAGCAAAAGAGCTTACAGCTGATTTACCTTCATCTATTGAGCCAGGCACTGAGTTT
AGTGGTTCAACATTTACACCTAACTACAGAACTGGTGATTTTTTAGATCCTAAAGCAAGAGCTAAAAATACTGGTGTTGA
ATATGCACAAGGTTTAGTTGCATTAGGAGGAGATGATGAAGAACTTGCCAAAGAAAATATTAAAGTTGATGTAAACGGCA
CTGGAATTATTACTCTTTCAATCAATAATGTGGATTCTGATACAGACGAATTTACTGGTACTTTTGAAGCTATCCAACCT
TCAGATACAGATATGGGGTCAAAAGATCCACTTGATGTAAAAATAATCGGAGAACTTTACGGAAGAAAAGCTTAA

Upstream 100 bases:

>100_bases
AAGTCCTAACTTTTATGGTCCTTTCCCAAGTAATATCCGTACTGAACAATTTAGGTGACCATTAATCATTTGTCACAGAA
CTTTACTGCTACTTTAAATT

Downstream 100 bases:

>100_bases
ATCCTAGTTTAAGCAAAAAAGGGGGTTAAACCCCCCTTTTTTTTTTTTAAAATTTTTCTTTATCAAACCAAAAGATGGAA
TTACAACAAAAAACAACAAG

Product: photosystem II manganese-stabilizing protein

Products: NA

Alternate protein names: MSP [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRIRSFLAFVISICITFAFVPVETFAFSERGNAQFTDVVNTGKANDCPTLDSSLVGSISIGNGDTLKGICMHPTEVYVKV
PGTKRKAAEFVSTKIISPRNNTTVTEVYGDIDKGTFTEKGGIDFQLITVLTPGGLEVPFAFSAKELTADLPSSIEPGTEF
SGSTFTPNYRTGDFLDPKARAKNTGVEYAQGLVALGGDDEELAKENIKVDVNGTGIITLSINNVDSDTDEFTGTFEAIQP
SDTDMGSKDPLDVKIIGELYGRKA

Sequences:

>Translated_264_residues
MRIRSFLAFVISICITFAFVPVETFAFSERGNAQFTDVVNTGKANDCPTLDSSLVGSISIGNGDTLKGICMHPTEVYVKV
PGTKRKAAEFVSTKIISPRNNTTVTEVYGDIDKGTFTEKGGIDFQLITVLTPGGLEVPFAFSAKELTADLPSSIEPGTEF
SGSTFTPNYRTGDFLDPKARAKNTGVEYAQGLVALGGDDEELAKENIKVDVNGTGIITLSINNVDSDTDEFTGTFEAIQP
SDTDMGSKDPLDVKIIGELYGRKA
>Mature_264_residues
MRIRSFLAFVISICITFAFVPVETFAFSERGNAQFTDVVNTGKANDCPTLDSSLVGSISIGNGDTLKGICMHPTEVYVKV
PGTKRKAAEFVSTKIISPRNNTTVTEVYGDIDKGTFTEKGGIDFQLITVLTPGGLEVPFAFSAKELTADLPSSIEPGTEF
SGSTFTPNYRTGDFLDPKARAKNTGVEYAQGLVALGGDDEELAKENIKVDVNGTGIITLSINNVDSDTDEFTGTFEAIQP
SDTDMGSKDPLDVKIIGELYGRKA

Specific function: MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Lumenal surface of thylakoid membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002628 [H]

Pfam domain/function: PF01716 MSP [H]

EC number: NA

Molecular weight: Translated: 28264; Mature: 28264

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRSFLAFVISICITFAFVPVETFAFSERGNAQFTDVVNTGKANDCPTLDSSLVGSISI
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCHHEEEEEE
GNGDTLKGICMHPTEVYVKVPGTKRKAAEFVSTKIISPRNNTTVTEVYGDIDKGTFTEKG
CCCCCCCEEEECCEEEEEECCCCHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCC
GIDFQLITVLTPGGLEVPFAFSAKELTADLPSSIEPGTEFSGSTFTPNYRTGDFLDPKAR
CCCEEEEEEECCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHH
AKNTGVEYAQGLVALGGDDEELAKENIKVDVNGTGIITLSINNVDSDTDEFTGTFEAIQP
CCCCCHHHHCCEEEECCCHHHHHHCCCEEEECCCEEEEEEECCCCCCCHHHCCEEEEECC
SDTDMGSKDPLDVKIIGELYGRKA
CCCCCCCCCCCCEEEEEHHCCCCC
>Mature Secondary Structure
MRIRSFLAFVISICITFAFVPVETFAFSERGNAQFTDVVNTGKANDCPTLDSSLVGSISI
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCHHEEEEEE
GNGDTLKGICMHPTEVYVKVPGTKRKAAEFVSTKIISPRNNTTVTEVYGDIDKGTFTEKG
CCCCCCCEEEECCEEEEEECCCCHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCC
GIDFQLITVLTPGGLEVPFAFSAKELTADLPSSIEPGTEFSGSTFTPNYRTGDFLDPKAR
CCCEEEEEEECCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHH
AKNTGVEYAQGLVALGGDDEELAKENIKVDVNGTGIITLSINNVDSDTDEFTGTFEAIQP
CCCCCHHHHCCEEEECCCHHHHHHCCCEEEECCCEEEEEEECCCCCCCHHHCCEEEEECC
SDTDMGSKDPLDVKIIGELYGRKA
CCCCCCCCCCCCEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3120187; 2689172 [H]