| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is cobD [H]
Identifier: 78778586
GI number: 78778586
Start: 192529
End: 193653
Strand: Reverse
Name: cobD [H]
Synonym: PMT9312_0200
Alternate gene names: 78778586
Gene position: 193653-192529 (Counterclockwise)
Preceding gene: 78778587
Following gene: 78778584
Centisome position: 11.33
GC content: 30.93
Gene sequence:
>1125_bases ATGAATAAATCGGACCCTAATGATTACACAAAAGAAGCCATGCATATTTCAAACTTAAAACATGGAGGAAATGTATATGC AAATGCAAAAAAATTAAATTTATTACCCTCTGAAATCATTGACGCAAGTGCCTCATTAGTACCCTTTGACCCCCCTAAAA TACTAATAGATTCATTAAATGCGGAAATTAAGAATCTTGGATTTAGATATTACCCTGAGAGAAATTTGAGTGATTTGAAA GAAATAATTGGTGAATTTCATGGAATAAATCCAGACAATATATTACCTGGGAATGGTGCTTCTGAGCTAATAACCTGGGC AGGTTATGAAGCATCCAAATTTAAAATCAATTGTATTCCTTCCCCAGGCTTTGTTGATTATGAAAGATCTTTAAATTGTT GGAATAGCAATTTCATAAATTACGAATTACCAAGAAACTGGAATAATATTTTTCCTCAATCATTTCCAATTTCCCCTAAA GGTGATGTTATTTGGATAACAAATCCACACAACCCTACTGGCCAATTGTGGTGTAAGAATTCATTAGAGGCAATTATAAA AAAATATAAATTAGTTATCTGTGATGAAGCTTTTTTATCAATAACACCTAATGGGGACAAAGAATCTTTAATACCATTAA CCAAAAAATATGATAATTTATTAGTCTTGCGGAGCTTGACCAAAATCTTCAATATTCCTGGTCTTAGATTAGGTTACGTT ATCGGTTCTTCGAAAAAACTTAAGCAATGGAAAATGAATAGAGATCCTTGGCCATTAAATTCCTTTGCCATTAAAGCCGG AATTGACCTACTAAATAATAATAAATTCTATGGAGAATGGATAAGGCAGATTCATAGCTGGATAAAGAATGAAAGAGAGA TAGTCTATGACAAACTATCAAAAATAGAAAACCTTAAAGTTCATAACTCTTCAACCAACTTTTTTTTAATAGAAAGTAAA ACATCTTTGTCGCCGAATATTAAATACTTAGAAAATAAGGGAATATTGCTTAGAGAATGCACTTCATTTAGATTTCTTGA CGAAAAGTGGGCAAGAATAAGTTTGCAGAATAGGAAAAATAACACTCTTTTATGTAAAGAAATTCAGAATTCCTTTAAAA AATAA
Upstream 100 bases:
>100_bases GAGGGGATTATAAAGCAACTCAATAACCATAAATTATCTAATATAAAAGAGGCCGTTGGATCAGGTTTAAAATGGGTTGA ATAAAATCAGAAGATGAATA
Downstream 100 bases:
>100_bases TTAATAAATTTTTTAATCTCATTGTTAGATTTAATTTTATTATTATTTTCCATGTTCTTCTTCATGAGATCTAATATTTC ATAATGATTTTTTCCCTTTT
Product: L-threonine O-3-phosphate decarboxylase
Products: NA
Alternate protein names: L-threonine-O-3-phosphate decarboxylase [H]
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MNKSDPNDYTKEAMHISNLKHGGNVYANAKKLNLLPSEIIDASASLVPFDPPKILIDSLNAEIKNLGFRYYPERNLSDLK EIIGEFHGINPDNILPGNGASELITWAGYEASKFKINCIPSPGFVDYERSLNCWNSNFINYELPRNWNNIFPQSFPISPK GDVIWITNPHNPTGQLWCKNSLEAIIKKYKLVICDEAFLSITPNGDKESLIPLTKKYDNLLVLRSLTKIFNIPGLRLGYV IGSSKKLKQWKMNRDPWPLNSFAIKAGIDLLNNNKFYGEWIRQIHSWIKNEREIVYDKLSKIENLKVHNSSTNFFLIESK TSLSPNIKYLENKGILLRECTSFRFLDEKWARISLQNRKNNTLLCKEIQNSFKK
Sequences:
>Translated_374_residues MNKSDPNDYTKEAMHISNLKHGGNVYANAKKLNLLPSEIIDASASLVPFDPPKILIDSLNAEIKNLGFRYYPERNLSDLK EIIGEFHGINPDNILPGNGASELITWAGYEASKFKINCIPSPGFVDYERSLNCWNSNFINYELPRNWNNIFPQSFPISPK GDVIWITNPHNPTGQLWCKNSLEAIIKKYKLVICDEAFLSITPNGDKESLIPLTKKYDNLLVLRSLTKIFNIPGLRLGYV IGSSKKLKQWKMNRDPWPLNSFAIKAGIDLLNNNKFYGEWIRQIHSWIKNEREIVYDKLSKIENLKVHNSSTNFFLIESK TSLSPNIKYLENKGILLRECTSFRFLDEKWARISLQNRKNNTLLCKEIQNSFKK >Mature_374_residues MNKSDPNDYTKEAMHISNLKHGGNVYANAKKLNLLPSEIIDASASLVPFDPPKILIDSLNAEIKNLGFRYYPERNLSDLK EIIGEFHGINPDNILPGNGASELITWAGYEASKFKINCIPSPGFVDYERSLNCWNSNFINYELPRNWNNIFPQSFPISPK GDVIWITNPHNPTGQLWCKNSLEAIIKKYKLVICDEAFLSITPNGDKESLIPLTKKYDNLLVLRSLTKIFNIPGLRLGYV IGSSKKLKQWKMNRDPWPLNSFAIKAGIDLLNNNKFYGEWIRQIHSWIKNEREIVYDKLSKIENLKVHNSSTNFFLIESK TSLSPNIKYLENKGILLRECTSFRFLDEKWARISLQNRKNNTLLCKEIQNSFKK
Specific function: Decarboxylates L-threonine-O-3-phosphate to yield (R)-1- amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin [H]
COG id: COG0079
COG function: function code E; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788332, Length=280, Percent_Identity=27.5, Blast_Score=82, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR005860 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =4.1.1.81 [H]
Molecular weight: Translated: 43043; Mature: 43043
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSDPNDYTKEAMHISNLKHGGNVYANAKKLNLLPSEIIDASASLVPFDPPKILIDSLN CCCCCCCHHHHHHHHHHCCCCCCCEEECCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHC AEIKNLGFRYYPERNLSDLKEIIGEFHGINPDNILPGNGASELITWAGYEASKFKINCIP HHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEECCCCCCEEEEEEEC SPGFVDYERSLNCWNSNFINYELPRNWNNIFPQSFPISPKGDVIWITNPHNPTGQLWCKN CCCCCCHHCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEHH SLEAIIKKYKLVICDEAFLSITPNGDKESLIPLTKKYDNLLVLRSLTKIFNIPGLRLGYV HHHHHHHHHEEEEECCEEEEECCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCEEEEE IGSSKKLKQWKMNRDPWPLNSFAIKAGIDLLNNNKFYGEWIRQIHSWIKNEREIVYDKLS ECCCHHHHHHCCCCCCCCCCCEEHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH KIENLKVHNSSTNFFLIESKTSLSPNIKYLENKGILLRECTSFRFLDEKWARISLQNRKN HHHCEEEECCCCCEEEEECCCCCCCCCEEECCCCEEEEHHCCHHHHHHHHHEEEEECCCC NTLLCKEIQNSFKK CCEEHHHHHHHHCC >Mature Secondary Structure MNKSDPNDYTKEAMHISNLKHGGNVYANAKKLNLLPSEIIDASASLVPFDPPKILIDSLN CCCCCCCHHHHHHHHHHCCCCCCCEEECCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHC AEIKNLGFRYYPERNLSDLKEIIGEFHGINPDNILPGNGASELITWAGYEASKFKINCIP HHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEECCCCCCEEEEEEEC SPGFVDYERSLNCWNSNFINYELPRNWNNIFPQSFPISPKGDVIWITNPHNPTGQLWCKN CCCCCCHHCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEHH SLEAIIKKYKLVICDEAFLSITPNGDKESLIPLTKKYDNLLVLRSLTKIFNIPGLRLGYV HHHHHHHHHEEEEECCEEEEECCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCEEEEE IGSSKKLKQWKMNRDPWPLNSFAIKAGIDLLNNNKFYGEWIRQIHSWIKNEREIVYDKLS ECCCHHHHHHCCCCCCCCCCCEEHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH KIENLKVHNSSTNFFLIESKTSLSPNIKYLENKGILLRECTSFRFLDEKWARISLQNRKN HHHCEEEECCCCCEEEEECCCCCCCCCEEECCCCEEEEHHCCHHHHHHHHHEEEEECCCC NTLLCKEIQNSFKK CCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]