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The map label for this gene is trpB [H]

Identifier: 78778552

GI number: 78778552

Start: 160050

End: 161294

Strand: Reverse

Name: trpB [H]

Synonym: PMT9312_0166

Alternate gene names: 78778552

Gene position: 161294-160050 (Counterclockwise)

Preceding gene: 78778555

Following gene: 78778550

Centisome position: 9.44

GC content: 37.67

Gene sequence:

>1245_bases
GTGGTAAGTACATTTTCTCGCCAAGATCAAAATTATAAAAATGACGATTTAAATCAACCCTCCAAAGAGGGAAGATTTGG
AAAATATGGTGGTCAATATGTTCCTGAAACACTAATGCCTGCTCTTTTTGAGCTTGAAACAGCTGCATCAAATGCATGGA
AAGATAAACTTTTTGTAAAAGAATTAAATCATCTACTTAAGACTTATGTAGGAAGAGAAACACCACTTTATGAAGCCAAA
AGACTTACTGAACATTACAAAACTAAACATGCAACTACAAGAATATGGCTAAAAAGAGAAGATTTAAATCATACAGGTGC
TCACAAAATTAATAATGCCCTTGGACAAGCTTTATTAGCAATAAGAATGGGTAAAAAAAGGATAATCGCAGAAACTGGAG
CAGGTCAGCATGGAGTTGCTACGGCTACTGTTTGTGCCAGATTTGGCATGAAATGTATTATCTATATGGGTGCTGAGGAC
ATAAAAAGACAATCCCTCAACGTCTTTAGAATGAAACTGCTAGGAGCCGAAGTTAAAGTTGTCAATTCTGGAACTGCAAC
ACTTAAAGATGCCACTAGTGAAGCTATTAGGGATTGGGTTTCTAATGTCGAAACCACACATTACATTTTAGGATCTGTTG
CGGGCCCGCACCCTTTCCCAAAAATTGTACGAGATTTTCATGCAGTTATAGGAGAAGAAACTAAAAAACAATGTCAGGAA
TCGTTTGGATCTTTACCAGATATTTTACTTGCTTGTGTAGGTGGGGGATCAAATGCAATGGGCCTTTTCCATCCTTTCAT
TAAAGAAACATCTGTACGACTAATTGGAGTTGAAGCCGCAGGAAGCGGAGTTGATACTGACAAACATGCTGCAACTATTA
CTAAAGGGTCAGTTGGAATTTTGCATGGATCAATGAGTCTTCTTTTACAAGATGATAATGGTCAAGTACAAGAAGCCCAC
TCAATAAGTGCAGGGTTAGATTACCCTGGAGTAGGACCTGAACATAGCCATTTAAAAGATATAGGCAGAGCAGAATATGG
GTCAGTCACAGATCAAGAAGCTTTAGATGCTTTGAGACTTGTTAGTGAACTTGAAGGAATTATACCAGCGCTTGAAACGT
CCCATGCCTTTGCTTGGTTAGATAAATTATGCCCTACTCTGGAAAAAGATACTCATATAGTTATCAATTGCTCTGGTAGA
GGTGACAAAGATGTTAATACTGTTGCATCTTCATTAGATATTTAA

Upstream 100 bases:

>100_bases
TCTTCAGATTTATTCTCATGATTATCAAATTCGATCCAATTCTTTTTTCCCATTATTTTTAATATAATCTATAGTTAGTT
AATACTTATTCTATAGAAAA

Downstream 100 bases:

>100_bases
TCAATACCTGGGAAGTGATGGATCAATATATCTACTCCATCCATCAATACCCTCCTCCAAATTCCATATTTCACTCACAA
AATTATTATCTAAGGCCCAT

Product: tryptophan synthase subunit beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MVSTFSRQDQNYKNDDLNQPSKEGRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAK
RLTEHYKTKHATTRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAED
IKRQSLNVFRMKLLGAEVKVVNSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQE
SFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAH
SISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGR
GDKDVNTVASSLDI

Sequences:

>Translated_414_residues
MVSTFSRQDQNYKNDDLNQPSKEGRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAK
RLTEHYKTKHATTRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAED
IKRQSLNVFRMKLLGAEVKVVNSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQE
SFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAH
SISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGR
GDKDVNTVASSLDI
>Mature_414_residues
MVSTFSRQDQNYKNDDLNQPSKEGRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAK
RLTEHYKTKHATTRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAED
IKRQSLNVFRMKLLGAEVKVVNSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQE
SFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAH
SISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGR
GDKDVNTVASSLDI

Specific function: The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine [H]

COG id: COG0133

COG function: function code E; Tryptophan synthase beta chain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpB family [H]

Homologues:

Organism=Escherichia coli, GI1787515, Length=384, Percent_Identity=56.25, Blast_Score=433, Evalue=1e-123,
Organism=Saccharomyces cerevisiae, GI6321412, Length=389, Percent_Identity=57.840616966581, Blast_Score=467, Evalue=1e-132,

Paralogues:

None

Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001926
- InterPro:   IPR006653
- InterPro:   IPR006654
- InterPro:   IPR023026 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.2.1.20 [H]

Molecular weight: Translated: 45118; Mature: 45118

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00168 TRP_SYNTHASE_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSTFSRQDQNYKNDDLNQPSKEGRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELNHLLKTYVGRETPLYEAKRLTEHYKTKHATTRIWLKREDLNHTGAHKINNALGQALLA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHH
IRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAEDIKRQSLNVFRMKLLGAEVKV
HHHCCHHEEEECCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCEEEE
VNSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQE
EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
SFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGI
HHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHEEEECCCEEE
LHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRL
EECCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
VSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MVSTFSRQDQNYKNDDLNQPSKEGRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELNHLLKTYVGRETPLYEAKRLTEHYKTKHATTRIWLKREDLNHTGAHKINNALGQALLA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHH
IRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAEDIKRQSLNVFRMKLLGAEVKV
HHHCCHHEEEECCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCEEEE
VNSGTATLKDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQE
EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
SFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGI
HHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHEEEECCCEEE
LHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRL
EECCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
VSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA