Click here to switch to the map view.

The map label for this gene is 78778539

Identifier: 78778539

GI number: 78778539

Start: 149128

End: 149949

Strand: Direct

Name: 78778539

Synonym: PMT9312_0153

Alternate gene names: NA

Gene position: 149128-149949 (Clockwise)

Preceding gene: 78778538

Following gene: 78778540

Centisome position: 8.72

GC content: 32.85

Gene sequence:

>822_bases
TTGTTGATTAAGTTTCTTCAAGATGCCGCTGGAAAAGGTGATCTTGATCCATGGGATATTGATGTAATAAGTGTAATTGA
TAGCTTTTTAGAGCAATACTCACAATCTTTTGGAAGAAAATCAAATAATCAGAGTTCATATCATAAGGATTTATCTGAGA
CTAGTGAGGCTTTTTTTGCAGCTTCCGTACTAGTCAATTTAAAGGCTCAAGTTTTGGAATCTGATGTTTTCAAAGAAAAT
TCTTCAGATTTTGAAGATGATTTTGACGTGGATGATCATGATTGGATTGATCAAGAATTTGATATTCCAAAATACCCTGA
AAAATATCTAAGGAGAAGATCAATAGCACAACCAATTCTCAAACGTACAACAACTCTTGGAGAACTGGTAAGTCAGTTAG
AGTCTATTGCTGAAGTGATAGAAACCCAAGATCTCTTGCTAATGAAGAGAAAAAGAAATAAAAAATATTCTGATAAGGCT
TTAATTTCTCAAGTTAAATCATTAGCGCATCGCGAGAAACTACCAGAAACCACTAAAGCATTAGGTGAATTTATTGAGGG
GTGGGAAAAAGCATTACAGTGGACAGATTTTGAATGCTTAGTTGAGAAATGGAAAACAGTTGTAAAAAATGATTTAGATA
AAGATCGTCTTGGGGTCTTTTGGGCTTTGTTATTTTTATTATCTGAAAACAAAATTGAAATTAAACAAATTAATTCCTTA
TATGGTCCAATTCAAATTAAAAGAATAATTCCTGAAGGGGGTTTAGCTCAATTGCCTATAGAAAATCTTGAGGCAACCAA
TACCTATCATTCTGCTGTTTAG

Upstream 100 bases:

>100_bases
TTTGGCATTAAATAATTAAGGAGATATCTTATGGGTAGATATTTAAAATTTTAAAATACCTTATTTCAATTCCATTGATA
GGCAACAATTAGGACCTAGA

Downstream 100 bases:

>100_bases
GAGCTTAGTAGTAATAACGTATAATCTTTAAAAAGAGGTTTTGAATTCATGAAGGCAATGATACTTGCGGCAGGTAAAGG
TACACGTGTTCAGCCCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: Chromosome Segregation And Condensation Protein ScpA; Condensin Subunit ScpA; ScpA/B Protein

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLIKFLQDAAGKGDLDPWDIDVISVIDSFLEQYSQSFGRKSNNQSSYHKDLSETSEAFFAASVLVNLKAQVLESDVFKEN
SSDFEDDFDVDDHDWIDQEFDIPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA
LISQVKSLAHREKLPETTKALGEFIEGWEKALQWTDFECLVEKWKTVVKNDLDKDRLGVFWALLFLLSENKIEIKQINSL
YGPIQIKRIIPEGGLAQLPIENLEATNTYHSAV

Sequences:

>Translated_273_residues
MLIKFLQDAAGKGDLDPWDIDVISVIDSFLEQYSQSFGRKSNNQSSYHKDLSETSEAFFAASVLVNLKAQVLESDVFKEN
SSDFEDDFDVDDHDWIDQEFDIPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA
LISQVKSLAHREKLPETTKALGEFIEGWEKALQWTDFECLVEKWKTVVKNDLDKDRLGVFWALLFLLSENKIEIKQINSL
YGPIQIKRIIPEGGLAQLPIENLEATNTYHSAV
>Mature_273_residues
MLIKFLQDAAGKGDLDPWDIDVISVIDSFLEQYSQSFGRKSNNQSSYHKDLSETSEAFFAASVLVNLKAQVLESDVFKEN
SSDFEDDFDVDDHDWIDQEFDIPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA
LISQVKSLAHREKLPETTKALGEFIEGWEKALQWTDFECLVEKWKTVVKNDLDKDRLGVFWALLFLLSENKIEIKQINSL
YGPIQIKRIIPEGGLAQLPIENLEATNTYHSAV

Specific function: Unknown

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31436; Mature: 31436

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCHHEEEECCCCCCCCCCHHHHHHCCHHHHCC
>Mature Secondary Structure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HCCHHEEEECCCCCCCCCCHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA