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The map label for this gene is rbcR [H]

Identifier: 78778535

GI number: 78778535

Start: 143451

End: 144410

Strand: Reverse

Name: rbcR [H]

Synonym: PMT9312_0149

Alternate gene names: 78778535

Gene position: 144410-143451 (Counterclockwise)

Preceding gene: 78778541

Following gene: 78778532

Centisome position: 8.45

GC content: 33.02

Gene sequence:

>960_bases
ATGCCCGAATTACCATTTACTCTCGATCAATTAAGAATACTAAAAGCAATAGCAGCTCAAGGAAGTTTTAAAAAAGCTGC
AGATCTCTTATATGTAACCCAACCTGCTGTAAGTTTACAAATTCAAAATCTAGAAAAACAACTTGAAATTACAATTTTCG
ACAGAGGCGGTAGAAAAGCTCTTTTAACTGAAGCAGGAAGATTACTACTTGAATATTGTGAACGAATTTTGAATCAATGC
GACGAAGCTTGTAAAGCTATCGAAGATTTAAATAGTTTAAAAGGTGGGACTCTTGTCATTGGAGCCAGTCAAACAACAGG
AACTTATTTAATGCCAAGAATGATAGGAGTATTCAGACAAAAATATCCTGATGTATCAGTTCAACTTCAGGTGCATAGTA
CTAGAAGAACTGGATGGAGTGTTGCCAATGGACAAATTGACTTAGCCATTATTGGAGGACAATTACCTGGAGATTTAGAA
AACTTACTACAAGTAATTCCATATTCGACAGATGAGTTAGCACTTGTTTTACATTCCAAACACCCACTTTCTAACAAAAA
AGAACTTTTAAAAGAAGATTTATATAAATTAAATTTTGTAACGTTGGATTCTCAATCTACAACCAGAAAAGTTGTTGATA
AACTTCTTCAAGATTCTGGACTTGATATTCAACGATTAAAAATTGAGATGGAACTTAACTCTCTTGAAGCAATTAAGAAT
GCAGTTCAATCAGGTCTAGGAGCTTCGTTTTTACCTGTTGTTTCAATTGAAAGAGAATTAGCGGCTGGAACAATCCATAA
AGCATTTGTTGCTGACTTAGAGGTTAAAAGAGAACTGAAATTAATTACTAATCCATCAAGATATACATCAAGAGCATCAG
AAGTTTTTAAGAAAAATATTCTTCCACAATTTGCTAGTTTAAAAAGTCCATTAAGGCAAATAAATTTTGATCAGAACTGA

Upstream 100 bases:

>100_bases
AGTTTCATGAATCTCCATAAATTTTAATTTTCAAATAATTTTAATTCTTAACAAGAATACTTCTAGGCATTAGAATTATA
AATAATTGTTGGCATAATGG

Downstream 100 bases:

>100_bases
ATTGCTTCTTTATTGATTCCTACTCCTCCATCTTCGGCTTGTCCATCTCCTTTGATGATAAATTTATTTTCATTCACATC
AGTCTGATAAACGCACTTAA

Product: putative Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGVFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYSTDELALVLHSKHPLSNKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELAAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLKSPLRQINFDQN

Sequences:

>Translated_319_residues
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQC
DEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGVFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLE
NLLQVIPYSTDELALVLHSKHPLSNKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
AVQSGLGASFLPVVSIERELAAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLKSPLRQINFDQN
>Mature_318_residues
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKALLTEAGRLLLEYCERILNQCD
EACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGVFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLEN
LLQVIPYSTDELALVLHSKHPLSNKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKNA
VQSGLGASFLPVVSIERELAAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNILPQFASLKSPLRQINFDQN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.9587628865979, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=31.2236286919831, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.2975778546713, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=26.8707482993197, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788296, Length=240, Percent_Identity=29.1666666666667, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=29.6666666666667, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.4584980237154, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=26.4591439688716, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788748, Length=314, Percent_Identity=24.8407643312102, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=297, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788626, Length=259, Percent_Identity=27.7992277992278, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=25.4032258064516, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.4193548387097, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87082024, Length=280, Percent_Identity=27.1428571428571, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789173, Length=310, Percent_Identity=28.0645161290323, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=27.1653543307087, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=255, Percent_Identity=26.2745098039216, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.9672131147541, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789492, Length=264, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790011, Length=304, Percent_Identity=23.3552631578947, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=28.6885245901639, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=24.4979919678715, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786448, Length=269, Percent_Identity=28.6245353159851, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787128, Length=118, Percent_Identity=35.5932203389831, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786401, Length=261, Percent_Identity=25.6704980842912, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35513; Mature: 35381

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHCCCCEEEEEEEECCCCCH
LLTEAGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGVFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYSTDELALVLHSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECC
HPLSNKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
CCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELAAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
LPQFASLKSPLRQINFDQN
CHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEITIFDRGGRKA
CCCCCHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHCCCCEEEEEEEECCCCCH
LLTEAGRLLLEYCERILNQCDEACKAIEDLNSLKGGTLVIGASQTTGTYLMPRMIGVFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGQLPGDLENLLQVIPYSTDELALVLHSK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECC
HPLSNKKELLKEDLYKLNFVTLDSQSTTRKVVDKLLQDSGLDIQRLKIEMELNSLEAIKN
CCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHH
AVQSGLGASFLPVVSIERELAAGTIHKAFVADLEVKRELKLITNPSRYTSRASEVFKKNI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
LPQFASLKSPLRQINFDQN
CHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]