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The map label for this gene is 78778530

Identifier: 78778530

GI number: 78778530

Start: 139636

End: 140055

Strand: Direct

Name: 78778530

Synonym: PMT9312_0144

Alternate gene names: NA

Gene position: 139636-140055 (Clockwise)

Preceding gene: 78778529

Following gene: 78778533

Centisome position: 8.17

GC content: 30.71

Gene sequence:

>420_bases
ATGAGTATTCGAATTTACATTGGCAATTTACCACAAGGATTTAATCAAAAAGAATTTGATAACCTTTTAAAATCAGTTTC
TGATTCGATTAGATTTAAAGCAGTTTTAGATAAGGAAACCAAGGAATGCAGGGGATTTGGTTTTGCGACAGCAAGTAATG
AAGAAAATGCTGATTTAATAATTCAGAAATTAAACGGTTTTGAATTTAATGGTTCCAAATTAAGAGTAGAGTTATCAGAA
AAAAAAGATTCTCTTTCAAAAAAAAGAAATAGTGGAAATTTTAACAAGAATAAGAAGAAGAAAGATTTTAAGAAAATTGT
TCATAGTGACGCCCCTAACCTTGAAGCACCTGATCCAAGATGGGCTGGAGAACTGTCTAAATTAAAAGATTTATTAGCTA
ATCAGAAGACACCTGCTTAG

Upstream 100 bases:

>100_bases
CAAAGCAATGGATTGAACAAAATGCGCCAAAATGTGATTAAATACACATAGCTTAGTTTTGTTTAGAAGTTCAGACTTCA
AAAATCATTTTTAAAAATTT

Downstream 100 bases:

>100_bases
TTATTTAATTCGAGAAATTAAAAAAGATATTGGTATCTCAAAGGCTTTAACTGAATTCTTTACAAAAGCTCTATTATTAA
AGACATCATAGTCTAACCTT

Product: RNA-binding region RNP-1 (RNA recognition motif)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSIRIYIGNLPQGFNQKEFDNLLKSVSDSIRFKAVLDKETKECRGFGFATASNEENADLIIQKLNGFEFNGSKLRVELSE
KKDSLSKKRNSGNFNKNKKKKDFKKIVHSDAPNLEAPDPRWAGELSKLKDLLANQKTPA

Sequences:

>Translated_139_residues
MSIRIYIGNLPQGFNQKEFDNLLKSVSDSIRFKAVLDKETKECRGFGFATASNEENADLIIQKLNGFEFNGSKLRVELSE
KKDSLSKKRNSGNFNKNKKKKDFKKIVHSDAPNLEAPDPRWAGELSKLKDLLANQKTPA
>Mature_138_residues
SIRIYIGNLPQGFNQKEFDNLLKSVSDSIRFKAVLDKETKECRGFGFATASNEENADLIIQKLNGFEFNGSKLRVELSEK
KDSLSKKRNSGNFNKNKKKKDFKKIVHSDAPNLEAPDPRWAGELSKLKDLLANQKTPA

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15718; Mature: 15587

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRIYIGNLPQGFNQKEFDNLLKSVSDSIRFKAVLDKETKECRGFGFATASNEENADLI
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHH
IQKLNGFEFNGSKLRVELSEKKDSLSKKRNSGNFNKNKKKKDFKKIVHSDAPNLEAPDPR
HHHCCCCEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
WAGELSKLKDLLANQKTPA
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SIRIYIGNLPQGFNQKEFDNLLKSVSDSIRFKAVLDKETKECRGFGFATASNEENADLI
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHH
IQKLNGFEFNGSKLRVELSEKKDSLSKKRNSGNFNKNKKKKDFKKIVHSDAPNLEAPDPR
HHHCCCCEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
WAGELSKLKDLLANQKTPA
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA