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The map label for this gene is rbfA

Identifier: 78778501

GI number: 78778501

Start: 114880

End: 115272

Strand: Direct

Name: rbfA

Synonym: PMT9312_0115

Alternate gene names: 78778501

Gene position: 114880-115272 (Clockwise)

Preceding gene: 78778500

Following gene: 78778502

Centisome position: 6.72

GC content: 28.5

Gene sequence:

>393_bases
ATGCCAAATAATTTCCGTCTTGCAAAAGTTTCTTCTCTTTTAAAGAAAGAAATCACCCTTATTTTGCAAAATGATTTGGA
AAATGATCTTATTAGAGATTATTTCGTCAATATTTCTAAGATTGATTTATCAGGTGATTTACAACACTGTAAAATTTACA
TAACTTCAACTGCTAAAGAGACAGTAAGGAAAGAGATTGTGGCAAATTTGAATACCGCTAAAAGCTTTATAAGAAATAAT
TTAGGAAAAAGAATAGAGATGAGAAGAGTTCCAGAGATAATTTTTAAAGAAGATATTGTTCTTGACAAAGGATTATCAGT
CTTGAAACTTCTTGATGAATTAAAAAATAAACATCAAGACAAGAATTATGAGGATAAGGATGCCAATAGTTGA

Upstream 100 bases:

>100_bases
CACTCACAATAGTAGGTTTAATATCTTCTGTTTTAAGTGCTTTCATAACAGTCTATTTTGTCTTGCAAGCAATGACAAAT
CCAATAAATTTACAATCATA

Downstream 100 bases:

>100_bases
TCGACCCCTTGATCAAAGAAATATAATTATCACTCGATCAAAAGAGGGGATATTGGATATCAAAAAGATATTCACAAGCA
AAGGCGCTAATATATATGAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPNNFRLAKVSSLLKKEITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKETVRKEIVANLNTAKSFIRNN
LGKRIEMRRVPEIIFKEDIVLDKGLSVLKLLDELKNKHQDKNYEDKDANS

Sequences:

>Translated_130_residues
MPNNFRLAKVSSLLKKEITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKETVRKEIVANLNTAKSFIRNN
LGKRIEMRRVPEIIFKEDIVLDKGLSVLKLLDELKNKHQDKNYEDKDANS
>Mature_129_residues
PNNFRLAKVSSLLKKEITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKETVRKEIVANLNTAKSFIRNNL
GKRIEMRRVPEIIFKEDIVLDKGLSVLKLLDELKNKHQDKNYEDKDANS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PROM9 (Q31D68)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_396613.1
- ProteinModelPortal:   Q31D68
- SMR:   Q31D68
- STRING:   Q31D68
- GeneID:   3764899
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_0115
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   APEIRFY
- ProtClustDB:   CLSK921741
- BioCyc:   PMAR74546:PMT9312_0115-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15074; Mature: 14942

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNFRLAKVSSLLKKEITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKE
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHEECCCCCCCEEEEEEECCHHH
TVRKEIVANLNTAKSFIRNNLGKRIEMRRVPEIIFKEDIVLDKGLSVLKLLDELKNKHQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
KNYEDKDANS
CCCCCCCCCC
>Mature Secondary Structure 
PNNFRLAKVSSLLKKEITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKE
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHEECCCCCCCEEEEEEECCHHH
TVRKEIVANLNTAKSFIRNNLGKRIEMRRVPEIIFKEDIVLDKGLSVLKLLDELKNKHQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
KNYEDKDANS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA