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The map label for this gene is 78778416

Identifier: 78778416

GI number: 78778416

Start: 30561

End: 30962

Strand: Reverse

Name: 78778416

Synonym: PMT9312_0031

Alternate gene names: NA

Gene position: 30962-30561 (Counterclockwise)

Preceding gene: 78778417

Following gene: 78778414

Centisome position: 1.81

GC content: 32.09

Gene sequence:

>402_bases
ATGCATATTAATGATGCTGTCTTTTTAGAGGATTTATGTCCTAAGTTCAGATTTAGACAATGGAGAAAATCTATTCATAG
ATTTACAGGAAAAAGTTGTATATATTGCGGAAAACCATCTGAATCTATAGACCATGTATTACCTCGAAGCCAAGGCGGCT
TAAGTACAACAGAAAATTGTGTACCTGCATGTCTTTCCTGTAATGGGGATAAATCAGATGAAAATGCTTTGTATTGGTAT
AGAAGACAAAAATTTTATGATCCTCGAAGAGCAATGGCTATAAGAGCTTGGTTAGAAGGAGATTTAAGATTAGCTATAAG
ATTACTGCAATGGGCTAATCCTAGTTTTAAAATAAGTAATAAAAATTACAAAAAAGATAAATCAGAATATAAAGCAGCTT
GA

Upstream 100 bases:

>100_bases
CTAAATTATATTTTTACGGGCTAATTTCAGCTAAAAAATAATAATTAAATATTGACTTTTGATAAATTCAAGCCATTATT
CATTTAACTAAATGGTCTGA

Downstream 100 bases:

>100_bases
CTACCAAATATTACAAATTTTTCTAGAGTTATAACTCTCACATATATTTCCCAATTCTCTTGGCGATTCTGGAAATATTA
AAATTGTCGAAAATGAAATG

Product: HNH nuclease

Products: NA

Alternate protein names: HNH Nuclease; McrA/HNH Family Nuclease; HNH Endonuclease

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVLPRSQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPSFKISNKNYKKDKSEYKAA

Sequences:

>Translated_133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVLPRSQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPSFKISNKNYKKDKSEYKAA
>Mature_133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVLPRSQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPSFKISNKNYKKDKSEYKAA

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15568; Mature: 15568

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVLPRSQGGLSTTENC
CCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCHHH
VPACLSCNGDKSDENALYWYRRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPSFKISN
HHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
KNYKKDKSEYKAA
CCCCCCCHHCCCC
>Mature Secondary Structure
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVLPRSQGGLSTTENC
CCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCHHH
VPACLSCNGDKSDENALYWYRRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPSFKISN
HHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
KNYKKDKSEYKAA
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA