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The map label for this gene is 78778410

Identifier: 78778410

GI number: 78778410

Start: 26189

End: 27280

Strand: Reverse

Name: 78778410

Synonym: PMT9312_0025

Alternate gene names: NA

Gene position: 27280-26189 (Counterclockwise)

Preceding gene: 78778413

Following gene: 78778409

Centisome position: 1.6

GC content: 33.7

Gene sequence:

>1092_bases
ATGCAAAAATTCTTATCAAATCAGAACAAACTTTTCTTAATTTTATCAATCATAATTTTACAGGTTTTTCTCTTTAAACC
CATTCAAGTACTAGCAGATTTACCTACTGGAAATGCGGTAAAAGACCCTAATGCAATCCTCAGAAACGCACTCCCTATCA
AGCAACTTGAGTTACAAGAAATTCAACACAAATTGGAAGAAACCAGTGACCTTGTAAGAGGAGGAAGATGGCCAGCTCTT
ACAAAAACTGTTACAAAATGTCAATCTTTACTAAAAAAATATCAAAGTCGAATTATCCAAGAATTACCAAACGATAAAAA
GAAAATTGCTGAAAAAACATTTTTAGAACTCAAAGAAAATTTTGATAGCCTTCAAGATCATTCTAAATCAAAGGATAAGT
ACTCATTTATAGACACCCGAAAAGAAGCTCTAGATAAAATAGGTGGATTAGAAGAATATTTTCTACCAAATCAATTTCCT
TACTATATTCCAGAAGAGTTTGATAACCTACCAAGACTACTAGGCAGAGCAAAAGTCAATATAAAAACCTCCAAAGGAGA
CATGAAAGCTATTGTGGATGGATTTAATGCCCCACTTACAGCAGGAGCATTTATAGATTTATCTTCAAAAAATTTCTATA
AAGATCTTCCTATAAATAGAGCAGAAGAATTTTTTGTACTGCAAACAGGTGATCCAATTGGTGAAGCAATTGGTTATTTA
GATCCTGAAACAAATGAAGAACGTCACGTTCCTCTCGAAATTAGAATTCCTGATGAAAAGGATACTTTTTATAATCAAAC
GTTTGAAGATTTAGGCCTTTACACAGAGACACCAACCTTACCTTTCGCGACACTTGGAACTCTAGGATGGTCCCATTCAA
ATACCGCAGTTGATGATGGCTCATCGCAATTTTTCTTCTTTTTATATGAAGCAGAATTAAATCCAGCAGGTCGCAATTTA
ATTGATGGACGGAATGCTGCCTTTGGTTATGTTGTAGATGGTTTTGATGTATTGGAAGAACTAACGAAAGATGACACAAT
AATCTCAATAGATGTTTTAGCAGGGATTGAAAACCTCAAATTAAATGCATAA

Upstream 100 bases:

>100_bases
AACTTGTCCATCCAATTCTATGGTGGTACCTGTGCGAAAATCGTTACTGGAGATCATTCCTGTATTACATCCCCAAGGAT
CATAAACCTACAAGAGTGCT

Downstream 100 bases:

>100_bases
AGAAATATTAGAAAATATAGGGGAAAAAGAATTAATAACTAGGCTTGGAAAATTTATGCCTAAAAATCAAGTTACAGATG
ATTGTGCTTTAATAAAAACT

Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MQKFLSNQNKLFLILSIIILQVFLFKPIQVLADLPTGNAVKDPNAILRNALPIKQLELQEIQHKLEETSDLVRGGRWPAL
TKTVTKCQSLLKKYQSRIIQELPNDKKKIAEKTFLELKENFDSLQDHSKSKDKYSFIDTRKEALDKIGGLEEYFLPNQFP
YYIPEEFDNLPRLLGRAKVNIKTSKGDMKAIVDGFNAPLTAGAFIDLSSKNFYKDLPINRAEEFFVLQTGDPIGEAIGYL
DPETNEERHVPLEIRIPDEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL
IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLAGIENLKLNA

Sequences:

>Translated_363_residues
MQKFLSNQNKLFLILSIIILQVFLFKPIQVLADLPTGNAVKDPNAILRNALPIKQLELQEIQHKLEETSDLVRGGRWPAL
TKTVTKCQSLLKKYQSRIIQELPNDKKKIAEKTFLELKENFDSLQDHSKSKDKYSFIDTRKEALDKIGGLEEYFLPNQFP
YYIPEEFDNLPRLLGRAKVNIKTSKGDMKAIVDGFNAPLTAGAFIDLSSKNFYKDLPINRAEEFFVLQTGDPIGEAIGYL
DPETNEERHVPLEIRIPDEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL
IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLAGIENLKLNA
>Mature_363_residues
MQKFLSNQNKLFLILSIIILQVFLFKPIQVLADLPTGNAVKDPNAILRNALPIKQLELQEIQHKLEETSDLVRGGRWPAL
TKTVTKCQSLLKKYQSRIIQELPNDKKKIAEKTFLELKENFDSLQDHSKSKDKYSFIDTRKEALDKIGGLEEYFLPNQFP
YYIPEEFDNLPRLLGRAKVNIKTSKGDMKAIVDGFNAPLTAGAFIDLSSKNFYKDLPINRAEEFFVLQTGDPIGEAIGYL
DPETNEERHVPLEIRIPDEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL
IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLAGIENLKLNA

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cellular thylakoid lumen (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130
- InterPro:   IPR023222 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 41123; Mature: 41123

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFLSNQNKLFLILSIIILQVFLFKPIQVLADLPTGNAVKDPNAILRNALPIKQLELQE
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH
IQHKLEETSDLVRGGRWPALTKTVTKCQSLLKKYQSRIIQELPNDKKKIAEKTFLELKEN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FDSLQDHSKSKDKYSFIDTRKEALDKIGGLEEYFLPNQFPYYIPEEFDNLPRLLGRAKVN
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEE
IKTSKGDMKAIVDGFNAPLTAGAFIDLSSKNFYKDLPINRAEEFFVLQTGDPIGEAIGYL
EEECCCHHHHHHHCCCCCCCCCEEEEECCCCCHHCCCCCCCCEEEEEECCCCHHHHHCCC
DPETNEERHVPLEIRIPDEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDG
CCCCCCCCCCCEEEECCCCCCHHHHCCHHHCCCEECCCCCCHHHHHHCCCCCCCCCCCCC
SSQFFFFLYEAELNPAGRNLIDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLAGIENLK
CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEHHHHCCCCCC
LNA
CCC
>Mature Secondary Structure
MQKFLSNQNKLFLILSIIILQVFLFKPIQVLADLPTGNAVKDPNAILRNALPIKQLELQE
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH
IQHKLEETSDLVRGGRWPALTKTVTKCQSLLKKYQSRIIQELPNDKKKIAEKTFLELKEN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FDSLQDHSKSKDKYSFIDTRKEALDKIGGLEEYFLPNQFPYYIPEEFDNLPRLLGRAKVN
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEE
IKTSKGDMKAIVDGFNAPLTAGAFIDLSSKNFYKDLPINRAEEFFVLQTGDPIGEAIGYL
EEECCCHHHHHHHCCCCCCCCCEEEEECCCCCHHCCCCCCCCEEEEEECCCCHHHHHCCC
DPETNEERHVPLEIRIPDEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDG
CCCCCCCCCCCEEEECCCCCCHHHHCCHHHCCCEECCCCCCHHHHHHCCCCCCCCCCCCC
SSQFFFFLYEAELNPAGRNLIDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLAGIENLK
CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEHHHHCCCCCC
LNA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]