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The map label for this gene is rpfG [H]

Identifier: 78358495

GI number: 78358495

Start: 3416427

End: 3417665

Strand: Reverse

Name: rpfG [H]

Synonym: Dde_3456

Alternate gene names: 78358495

Gene position: 3417665-3416427 (Counterclockwise)

Preceding gene: 78358496

Following gene: 78358485

Centisome position: 91.62

GC content: 58.43

Gene sequence:

>1239_bases
GTGTACAGAAAAATCAAGGCGCAGGACCTGCGTCCCGGTATGTATGTGGTGGATGTGGGGCTTTCATGGCTTGAAAACCC
GTATCTGTATATGACGGAAGGTGTGCTGGCCGATGAAGAGGCCGTCGGGCGCGTTTTGTCTGAAGGATACGAAGAGGCCG
TCATTGACCTGCGCCGCTGTCTTGAAGGATCTGTGCCGGATGATCTGGCAGAACTGGAACCGCTGACCGATGCCGAGCAT
GTTTCGCGCGCTGTCAGCGCAACGGCGGACAGTCCAGTTTCCGCAGTGGCGCAGCGGGTGCCTGTGGCGCAGGAGATGCT
TGCCGCCAAAGCCATTTATTCGGAAAGCATCACCTTTGTGCGGGGCTTTATGGAGGGCGCGCGCGAAGGCAGACCTGTTG
ATCTGAAAGCGGCTGAACCGCTGGTCGAAGACATTATTCAGTCTGTAAGCCGCAATGCCGGCGCGCTTATCGGGTTCGCC
AAGCTGCGTGCCTACGACCTGTACACCTACACGCACAGTCTCAATGTTTCGCTGCTTGCCGTGGCTTTCGGCAAGTACCT
CGGCCTTGATACCGTAGCCCTGCGACAGATTGGTCTCGCGGGGCTTTTTCATGATCTGGGCAAGGCGCTTATTCCCGATT
TCATACTCAACTGCCCGGGCAGACTCACGCCGGAAGAGTTTTCGGTCATGAAGCGGCACCCTGTGCTGGGCAGGGATGTA
CTGCCCGGCGGAGGCCGGATTCCCGACATGGTGCTGGAGGGCATGCTGCAGCACCACGAGAAATTTAACGGTACGGGGTA
TCCTGCCGGTCTGAAAGGTGATGCCATAAGCGAGGCAGGCAGGATTATCGCCGTGGTGGATGTGTATGACGCCCTGACAA
GCAAGCGTCCCTACAAGAATGCCATGCTGCCCAACAAGGCGCTTTCCATTCTGTACAGCATGGCGGGTGAAGAGTTTTAT
CCGGGGTATGTCGAACACTTCATCAAGTGCATCGGTATTTATCCCGTGGGCCAGATTGTCCGTCTGAATACGGGGCAGGT
GGGGGTTGTATCCGCCACGGACCCTGCGGTGCCGCTGCGTCCGGAAGTTATTGTGGTGCGCGACCCGCTGGGCAGACCGG
CCCCGCCGCGACTCATCCGGCTGGCGGATGTCATCTCTGTTTCTGTTACGGAAACACTGGAGGCCGCACATGCGGGCATT
GATGCGGCAAGGGTTCTGCAGGACGGGGCGGCATCCTGA

Upstream 100 bases:

>100_bases
GTGTTTTCCTTGGTGTGGACGTGCGGGAGTCTGCCGGCAGCGTCGCTGAAAAAGCGTGTGCTGCGGTGCGTCCTGCTTGT
GCGGAAGGAGGACGTCGACC

Downstream 100 bases:

>100_bases
AAACCGCAGGCATGGCGGACCGGCATAATGAATCTGCACCGCTCTGCAGGTGGCGGCAGCGCAGCATGGCAGACCCTGAA
ACTGCGTGACGGCGCGGGCG

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MYRKIKAQDLRPGMYVVDVGLSWLENPYLYMTEGVLADEEAVGRVLSEGYEEAVIDLRRCLEGSVPDDLAELEPLTDAEH
VSRAVSATADSPVSAVAQRVPVAQEMLAAKAIYSESITFVRGFMEGAREGRPVDLKAAEPLVEDIIQSVSRNAGALIGFA
KLRAYDLYTYTHSLNVSLLAVAFGKYLGLDTVALRQIGLAGLFHDLGKALIPDFILNCPGRLTPEEFSVMKRHPVLGRDV
LPGGGRIPDMVLEGMLQHHEKFNGTGYPAGLKGDAISEAGRIIAVVDVYDALTSKRPYKNAMLPNKALSILYSMAGEEFY
PGYVEHFIKCIGIYPVGQIVRLNTGQVGVVSATDPAVPLRPEVIVVRDPLGRPAPPRLIRLADVISVSVTETLEAAHAGI
DAARVLQDGAAS

Sequences:

>Translated_412_residues
MYRKIKAQDLRPGMYVVDVGLSWLENPYLYMTEGVLADEEAVGRVLSEGYEEAVIDLRRCLEGSVPDDLAELEPLTDAEH
VSRAVSATADSPVSAVAQRVPVAQEMLAAKAIYSESITFVRGFMEGAREGRPVDLKAAEPLVEDIIQSVSRNAGALIGFA
KLRAYDLYTYTHSLNVSLLAVAFGKYLGLDTVALRQIGLAGLFHDLGKALIPDFILNCPGRLTPEEFSVMKRHPVLGRDV
LPGGGRIPDMVLEGMLQHHEKFNGTGYPAGLKGDAISEAGRIIAVVDVYDALTSKRPYKNAMLPNKALSILYSMAGEEFY
PGYVEHFIKCIGIYPVGQIVRLNTGQVGVVSATDPAVPLRPEVIVVRDPLGRPAPPRLIRLADVISVSVTETLEAAHAGI
DAARVLQDGAAS
>Mature_412_residues
MYRKIKAQDLRPGMYVVDVGLSWLENPYLYMTEGVLADEEAVGRVLSEGYEEAVIDLRRCLEGSVPDDLAELEPLTDAEH
VSRAVSATADSPVSAVAQRVPVAQEMLAAKAIYSESITFVRGFMEGAREGRPVDLKAAEPLVEDIIQSVSRNAGALIGFA
KLRAYDLYTYTHSLNVSLLAVAFGKYLGLDTVALRQIGLAGLFHDLGKALIPDFILNCPGRLTPEEFSVMKRHPVLGRDV
LPGGGRIPDMVLEGMLQHHEKFNGTGYPAGLKGDAISEAGRIIAVVDVYDALTSKRPYKNAMLPNKALSILYSMAGEEFY
PGYVEHFIKCIGIYPVGQIVRLNTGQVGVVSATDPAVPLRPEVIVVRDPLGRPAPPRLIRLADVISVSVTETLEAAHAGI
DAARVLQDGAAS

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44506; Mature: 44506

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRKIKAQDLRPGMYVVDVGLSWLENPYLYMTEGVLADEEAVGRVLSEGYEEAVIDLRRC
CCCCCCCCCCCCCEEEEECCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEGSVPDDLAELEPLTDAEHVSRAVSATADSPVSAVAQRVPVAQEMLAAKAIYSESITFV
HCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RGFMEGAREGRPVDLKAAEPLVEDIIQSVSRNAGALIGFAKLRAYDLYTYTHSLNVSLLA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHEEEEEEEECCCHHHHH
VAFGKYLGLDTVALRQIGLAGLFHDLGKALIPDFILNCPGRLTPEEFSVMKRHPVLGRDV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
LPGGGRIPDMVLEGMLQHHEKFNGTGYPAGLKGDAISEAGRIIAVVDVYDALTSKRPYKN
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEHHHHHHCCCCCCC
AMLPNKALSILYSMAGEEFYPGYVEHFIKCIGIYPVGQIVRLNTGQVGVVSATDPAVPLR
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCC
PEVIVVRDPLGRPAPPRLIRLADVISVSVTETLEAAHAGIDAARVLQDGAAS
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MYRKIKAQDLRPGMYVVDVGLSWLENPYLYMTEGVLADEEAVGRVLSEGYEEAVIDLRRC
CCCCCCCCCCCCCEEEEECCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEGSVPDDLAELEPLTDAEHVSRAVSATADSPVSAVAQRVPVAQEMLAAKAIYSESITFV
HCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RGFMEGAREGRPVDLKAAEPLVEDIIQSVSRNAGALIGFAKLRAYDLYTYTHSLNVSLLA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHEEEEEEEECCCHHHHH
VAFGKYLGLDTVALRQIGLAGLFHDLGKALIPDFILNCPGRLTPEEFSVMKRHPVLGRDV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
LPGGGRIPDMVLEGMLQHHEKFNGTGYPAGLKGDAISEAGRIIAVVDVYDALTSKRPYKN
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEHHHHHHCCCCCCC
AMLPNKALSILYSMAGEEFYPGYVEHFIKCIGIYPVGQIVRLNTGQVGVVSATDPAVPLR
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCC
PEVIVVRDPLGRPAPPRLIRLADVISVSVTETLEAAHAGIDAARVLQDGAAS
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]