| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is pflD [H]
Identifier: 78358322
GI number: 78358322
Start: 3271689
End: 3274229
Strand: Reverse
Name: pflD [H]
Synonym: Dde_3282
Alternate gene names: 78358322
Gene position: 3274229-3271689 (Counterclockwise)
Preceding gene: 78358323
Following gene: 78358321
Centisome position: 87.78
GC content: 57.81
Gene sequence:
>2541_bases GTGGATCTCCAGGACTTTTCACATAAGCTCGCGGAAGCGACAAAGAACCTTACTCCGGCAGAACGTGCTTCGCTGAAGAA GATTTTCGAGGGCGTATCCGCCGAGGTCTTCAGCCAGCCCGCTCCTGTATCCGCCGTGGCAACAGGTGCAGAATCCGGCA TTCCCGACGGGCCTACGCCCCGTCACGTCAAGCTGAAGGAAAACTTCCTCAAGCAGGTGCCCAGCATCACCGTTCAGCGC GCTGTGGCCATCACCAAAATCGCCAAGGAAAACCCCGGTCTGCCCAAGCCGCTGCTGCGCGCCAAGACTTTCCGGTATTG CTGCGAAACCGCCCCGCTGGTCATTCAGGACCATGAGCTTATCGTGGGTTCGCCCAACGGTGCCCCGCGTGCCGGTGCGT TTTCTCCGGAAGTGGCATGGCGCTGGCTGCAGGATGAGCTGGACACCATCGGCTCACGTCCTCAGGACCCCTTCTACATT TCCGAAGAAGACAAAAAAGTGCTGCGGGAAGAGGTGTTCCCCTTCTGGCAGAACAAGTCCGTGGATGAATTCTGCGAAGG TCAGTACCGCGAAGCCGACCTGTGGGAAATGTCCGGCGAATCTTTCGTGTCCGACTGCTCCTACCATGCGGTGAACGGCG GCGGCGACTCCAACCCCGGTTACGACGTAATTCTGATGAAGAAGGGTATGCTTGATATCCAGCGTGAAGCCCGCGAAAAG CTGGAACAGCTGGATTACGCCAACCCTGAAGACATCGATAAAATCTACTTCTACAAGTCCGTCATCGAGACTGCCGAAGG CGTGATGATATACGCCAGGCGTCTGTCGGCCTATGCCGCCGAACTGGCAGCCCGGGAAACCGACCCCCGCCGCAAAGCCG AACTGCAGAAGATTTCCGAGGTCAACGCCCGTGTGCCCGCACATGCGCCTTCCAACTTCTGGGAAGCCATTCAGGCCGTG TGGACCGTGGAATCTCTGCTGGTGGTTGAAGAAAACCAGACCGGTATGTCCATCGGCCGTGTTGACCAGTACATGTACCC CTTCTACAGGGCAGACATCGATTCCGGCCGTCTGACCGAGTACGAAGCTTTTGATCTGGCCGGCTGCATGCTGGTGAAGA TGTCTGAAATGATGTGGATCACCAGCGAAGGTGCTTCCAAGTTCTTTGCCGGGTACCAGCCTTTTGTGAACATGTGCGTG GGCGGCGTGACCCGTGAAGGCCACGATGCCACCAACGACCTTACCTACATGCTGATGGATGCCGTGCGTCACGTGCGTAT CTACCAGCCCACGCTGGCCACCCGCGTGCACAACAAGTCTCCGCAGAAGTATCTGAAGAAGATTGTGGACGTTATCCGCT CCGGCATGGGCTTCCCCGCGGTGCATTTTGACGACGCGCACATCAAGATGATGCTGGCCAAGGGCGTGAGCATTGAAGAT GCCCGCGACTACTGCCTGATGGGTTGCGTGGAACCGCAGAAATCAGGCCGTCTGTACCAGTGGACCTCCACCGGCTATAC CCAGTGGCCCATCTGCATCGAACTGGTGCTCAACCACGGCGTGCCGCTGTGGTACGGCAAAAAGGTAACCCCCGACATGG GCGACCTGAGCCAGTATGACACCTACGAAAAGTTCGAAGCCGCCGTTAAGGAACAGATCCGCTGGATTACCAAAAACACC AGTGTGGCCACCGTCATTTCGCAGCGCGCTCACAGAGAGCTTGCCCCCAAGCCGCTCATGTCGCTGATGTATGAAGGCTG CATGGAATCGGGCCGCGACGTTTCTGCCGGCGGTGCCATGTACAACTTCGGCCCCGGCGTGGTCTGGAGCGGTCTTGCCA CCTATGTGGACTCCATGGCCGCCATTAAAAAGCTGGTCTACGACGACAGAAAGTACACCCTCGCGCAGCTCAACGAGGCC CTGAAGGCCGACTTTGCCGGGTACGATCAGATTCTGGCCGACTGCCTTGCCGCACCCAAATACGGCAACGACGATGATTA CGCCGACATGATCGCAGCCGATCTGGTGCACTTCACCGAAACCGAGCACCGCAAGTACAAAACTCTGTATTCCGTGCTCA GCCACGGTACGCTGTCCATCTCCAACAACACGCCTTTCGGCCAGCTGCTCGGCGCCTCCGCCAACGGCCGCAGAGCGTGG ATGCCTCTTTCCGACGGCATCAGCCCCACACAGGGTGCGGACTACAAGGGCCCCACAGCCATCATCAAGTCCGTTTCCAA AATGGCCAACGACAACATGAACATCGGCATGGTGCACAACTTCAAGCTGATGTCCGGCCTGCTGGATACCCCCGAAGGTG AAAACGGCCTGATAACGCTCATCCGTACCGCCTGCATGCTGGGCAACGGTGAAATGCAGTTCAACTATCTTGATAACGAA CTGCTGCTGGACGCCCAGAAGCATCCGGAAAAATACCGCGACCTCGTGGTGCGCGTGGCCGGATACAGCGCCTTCTTCGT GGAGCTGTGCAAGGACGTTCAGGACGAAATCATCAGCCGTACCATGCTGCATGGTTTCTAA
Upstream 100 bases:
>100_bases AAAATGCAGGCGTTGCACCGGATCCTGATGGAAGCGATCGGGGTCATGGACGGGGCAGCACACAGATGAAGGAACTTATC CGTTAAAGGGAGGATGCAAA
Downstream 100 bases:
>100_bases TTAAGCCATGGTAATGCCCTCGGGATTTGAGAACCGCAACACACAGAGACGACACCGTGATTGAAAGAAAAGCACTGATT TTCAACATACAGAAATACAA
Product: formate C-acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase 2 [H]
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MDLQDFSHKLAEATKNLTPAERASLKKIFEGVSAEVFSQPAPVSAVATGAESGIPDGPTPRHVKLKENFLKQVPSITVQR AVAITKIAKENPGLPKPLLRAKTFRYCCETAPLVIQDHELIVGSPNGAPRAGAFSPEVAWRWLQDELDTIGSRPQDPFYI SEEDKKVLREEVFPFWQNKSVDEFCEGQYREADLWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREK LEQLDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKAELQKISEVNARVPAHAPSNFWEAIQAV WTVESLLVVEENQTGMSIGRVDQYMYPFYRADIDSGRLTEYEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQPFVNMCV GGVTREGHDATNDLTYMLMDAVRHVRIYQPTLATRVHNKSPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIED ARDYCLMGCVEPQKSGRLYQWTSTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYDTYEKFEAAVKEQIRWITKNT SVATVISQRAHRELAPKPLMSLMYEGCMESGRDVSAGGAMYNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEA LKADFAGYDQILADCLAAPKYGNDDDYADMIAADLVHFTETEHRKYKTLYSVLSHGTLSISNNTPFGQLLGASANGRRAW MPLSDGISPTQGADYKGPTAIIKSVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITLIRTACMLGNGEMQFNYLDNE LLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISRTMLHGF
Sequences:
>Translated_846_residues MDLQDFSHKLAEATKNLTPAERASLKKIFEGVSAEVFSQPAPVSAVATGAESGIPDGPTPRHVKLKENFLKQVPSITVQR AVAITKIAKENPGLPKPLLRAKTFRYCCETAPLVIQDHELIVGSPNGAPRAGAFSPEVAWRWLQDELDTIGSRPQDPFYI SEEDKKVLREEVFPFWQNKSVDEFCEGQYREADLWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREK LEQLDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKAELQKISEVNARVPAHAPSNFWEAIQAV WTVESLLVVEENQTGMSIGRVDQYMYPFYRADIDSGRLTEYEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQPFVNMCV GGVTREGHDATNDLTYMLMDAVRHVRIYQPTLATRVHNKSPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIED ARDYCLMGCVEPQKSGRLYQWTSTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYDTYEKFEAAVKEQIRWITKNT SVATVISQRAHRELAPKPLMSLMYEGCMESGRDVSAGGAMYNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEA LKADFAGYDQILADCLAAPKYGNDDDYADMIAADLVHFTETEHRKYKTLYSVLSHGTLSISNNTPFGQLLGASANGRRAW MPLSDGISPTQGADYKGPTAIIKSVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITLIRTACMLGNGEMQFNYLDNE LLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISRTMLHGF >Mature_846_residues MDLQDFSHKLAEATKNLTPAERASLKKIFEGVSAEVFSQPAPVSAVATGAESGIPDGPTPRHVKLKENFLKQVPSITVQR AVAITKIAKENPGLPKPLLRAKTFRYCCETAPLVIQDHELIVGSPNGAPRAGAFSPEVAWRWLQDELDTIGSRPQDPFYI SEEDKKVLREEVFPFWQNKSVDEFCEGQYREADLWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREK LEQLDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKAELQKISEVNARVPAHAPSNFWEAIQAV WTVESLLVVEENQTGMSIGRVDQYMYPFYRADIDSGRLTEYEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQPFVNMCV GGVTREGHDATNDLTYMLMDAVRHVRIYQPTLATRVHNKSPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIED ARDYCLMGCVEPQKSGRLYQWTSTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYDTYEKFEAAVKEQIRWITKNT SVATVISQRAHRELAPKPLMSLMYEGCMESGRDVSAGGAMYNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEA LKADFAGYDQILADCLAAPKYGNDDDYADMIAADLVHFTETEHRKYKTLYSVLSHGTLSISNNTPFGQLLGASANGRRAW MPLSDGISPTQGADYKGPTAIIKSVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITLIRTACMLGNGEMQFNYLDNE LLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISRTMLHGF
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1790388, Length=795, Percent_Identity=33.7106918238994, Blast_Score=429, Evalue=1e-121, Organism=Escherichia coli, GI1787044, Length=800, Percent_Identity=31.75, Blast_Score=385, Evalue=1e-108, Organism=Escherichia coli, GI48994926, Length=589, Percent_Identity=24.6179966044143, Blast_Score=136, Evalue=7e-33, Organism=Escherichia coli, GI1787131, Length=547, Percent_Identity=24.6800731261426, Blast_Score=130, Evalue=4e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 - InterPro: IPR010098 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 94641; Mature: 94641
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLQDFSHKLAEATKNLTPAERASLKKIFEGVSAEVFSQPAPVSAVATGAESGIPDGPTP CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCCCCCCCCCCCC RHVKLKENFLKQVPSITVQRAVAITKIAKENPGLPKPLLRAKTFRYCCETAPLVIQDHEL CEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCEE IVGSPNGAPRAGAFSPEVAWRWLQDELDTIGSRPQDPFYISEEDKKVLREEVFPFWQNKS EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCCC VDEFCEGQYREADLWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREK HHHHHCCCCCCCHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEEEEECCCHHHHHHHHHH LEQLDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKAELQKISE HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VNARVPAHAPSNFWEAIQAVWTVESLLVVEENQTGMSIGRVDQYMYPFYRADIDSGRLTE HHCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCHHHCCCCCCCCCC YEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQPFVNMCVGGVTREGHDATNDLTYMLMD CHHHHHHHHHHHHHHHHHEEECCCCHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH AVRHVRIYQPTLATRVHNKSPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIED HHHHHEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHEEHHHCCCCCCC ARDYCLMGCVEPQKSGRLYQWTSTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYD CCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHCC TYEKFEAAVKEQIRWITKNTSVATVISQRAHRELAPKPLMSLMYEGCMESGRDVSAGGAM HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCE YNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEALKADFAGYDQILADCLAAPK EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC YGNDDDYADMIAADLVHFTETEHRKYKTLYSVLSHGTLSISNNTPFGQLLGASANGRRAW CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCEEE MPLSDGISPTQGADYKGPTAIIKSVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCCHHHH IRTACMLGNGEMQFNYLDNELLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISR HHHHHHHCCCCEEEEECCCHHEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH TMLHGF HHHHCC >Mature Secondary Structure MDLQDFSHKLAEATKNLTPAERASLKKIFEGVSAEVFSQPAPVSAVATGAESGIPDGPTP CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCCCCCCCCCCCC RHVKLKENFLKQVPSITVQRAVAITKIAKENPGLPKPLLRAKTFRYCCETAPLVIQDHEL CEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCEE IVGSPNGAPRAGAFSPEVAWRWLQDELDTIGSRPQDPFYISEEDKKVLREEVFPFWQNKS EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCCC VDEFCEGQYREADLWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREK HHHHHCCCCCCCHHHHCCCHHHHHCCCCEEECCCCCCCCCEEEEEEECCCHHHHHHHHHH LEQLDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKAELQKISE HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VNARVPAHAPSNFWEAIQAVWTVESLLVVEENQTGMSIGRVDQYMYPFYRADIDSGRLTE HHCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCHHHCCCCCCCCCC YEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQPFVNMCVGGVTREGHDATNDLTYMLMD CHHHHHHHHHHHHHHHHHEEECCCCHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH AVRHVRIYQPTLATRVHNKSPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIED HHHHHEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHEEHHHCCCCCCC ARDYCLMGCVEPQKSGRLYQWTSTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYD CCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHCC TYEKFEAAVKEQIRWITKNTSVATVISQRAHRELAPKPLMSLMYEGCMESGRDVSAGGAM HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCE YNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEALKADFAGYDQILADCLAAPK EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC YGNDDDYADMIAADLVHFTETEHRKYKTLYSVLSHGTLSISNNTPFGQLLGASANGRRAW CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCEEE MPLSDGISPTQGADYKGPTAIIKSVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCCHHHH IRTACMLGNGEMQFNYLDNELLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISR HHHHHHHCCCCEEEEECCCHHEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH TMLHGF HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 7773398 [H]