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The map label for this gene is ccmK [H]

Identifier: 78358320

GI number: 78358320

Start: 3270027

End: 3270650

Strand: Reverse

Name: ccmK [H]

Synonym: Dde_3280

Alternate gene names: 78358320

Gene position: 3270650-3270027 (Counterclockwise)

Preceding gene: 78358321

Following gene: 78358319

Centisome position: 87.68

GC content: 61.7

Gene sequence:

>624_bases
ATGACGGCACTCGGGCTTATAGAAACAAAAGGACTGCTTGCGGCGGTGGAAGCGGCTGATGCCATGCTGAAAGCCGCTGA
TGTGCGCCTTTTGGAAAAGAACCTCGCAAGCGGGGGCCTTGTGACCATCACCGTGGCGGGCGAAGTGTCCGCCGTGCGGG
CAGCAGTTGACGCGGGTGTATCGGCTATCAGGCGCGTCAACGCCGCCTCGCTTGTTTCAGAGCATGTCATCGCCCGTCCT
GACGAAGGAGTGAGCCGCGTCGTGTCTCTGGTACCTCCGGCTGCCGTGCCGCCCGCCGCACCGCCTGTACAGGCTCCCGC
GGGGGATTCCGGCGCACAGCAGCCCGTACAAGAAGCAGCGGAGGCAGAACCGCAGACCGGCTCCACCGTTGAAGAACAGA
CTCCGGCTGCTGTTGAAGCAAGTCCGGCGCCGGCAGCCGCCGCCCCCCGTACGGAAACGGTCCGGTACGAAATTTCGCAA
CTGAAGAAGATGAACGTCAGCAGGCTGCGGCAGGTTGCCCGCGGGGTGAGCGGTCTTTCCATACCCCGCGAGGCGGTCAA
ATCTGCGAACAAAAAAGATCTGATTGACGCGATCATCAATTCATACAGGCAGATAGAGGAGTAG

Upstream 100 bases:

>100_bases
GAGGCCTGCATCCGCAAATATGACTTTCCGGTTTCGGTGATCCGCCACTGATGGAAACACACAGTTCACACACCTGCTGT
GAACGGGGAGAATCACGTTT

Downstream 100 bases:

>100_bases
TCCCATGGTAGACAAGGATTTATTGTCCATTCAGGAAGCCCGTGCGCTGGTGCGCGCCGCCCGTGTTGCTCAGGCTGAGT
ACGCTCAGCTGGGTCAGGAG

Product: carbon dioxide concentrating mechanism/carboxysome shell protein-like

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTALGLIETKGLLAAVEAADAMLKAADVRLLEKNLASGGLVTITVAGEVSAVRAAVDAGVSAIRRVNAASLVSEHVIARP
DEGVSRVVSLVPPAAVPPAAPPVQAPAGDSGAQQPVQEAAEAEPQTGSTVEEQTPAAVEASPAPAAAAPRTETVRYEISQ
LKKMNVSRLRQVARGVSGLSIPREAVKSANKKDLIDAIINSYRQIEE

Sequences:

>Translated_207_residues
MTALGLIETKGLLAAVEAADAMLKAADVRLLEKNLASGGLVTITVAGEVSAVRAAVDAGVSAIRRVNAASLVSEHVIARP
DEGVSRVVSLVPPAAVPPAAPPVQAPAGDSGAQQPVQEAAEAEPQTGSTVEEQTPAAVEASPAPAAAAPRTETVRYEISQ
LKKMNVSRLRQVARGVSGLSIPREAVKSANKKDLIDAIINSYRQIEE
>Mature_206_residues
TALGLIETKGLLAAVEAADAMLKAADVRLLEKNLASGGLVTITVAGEVSAVRAAVDAGVSAIRRVNAASLVSEHVIARPD
EGVSRVVSLVPPAAVPPAAPPVQAPAGDSGAQQPVQEAAEAEPQTGSTVEEQTPAAVEASPAPAAAAPRTETVRYEISQL
KKMNVSRLRQVARGVSGLSIPREAVKSANKKDLIDAIINSYRQIEE

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=80, Percent_Identity=53.75, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082105, Length=89, Percent_Identity=44.9438202247191, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 21250; Mature: 21119

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALGLIETKGLLAAVEAADAMLKAADVRLLEKNLASGGLVTITVAGEVSAVRAAVDAGV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
SAIRRVNAASLVSEHVIARPDEGVSRVVSLVPPAAVPPAAPPVQAPAGDSGAQQPVQEAA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
EAEPQTGSTVEEQTPAAVEASPAPAAAAPRTETVRYEISQLKKMNVSRLRQVARGVSGLS
HCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
IPREAVKSANKKDLIDAIINSYRQIEE
CCHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TALGLIETKGLLAAVEAADAMLKAADVRLLEKNLASGGLVTITVAGEVSAVRAAVDAGV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
SAIRRVNAASLVSEHVIARPDEGVSRVVSLVPPAAVPPAAPPVQAPAGDSGAQQPVQEAA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
EAEPQTGSTVEEQTPAAVEASPAPAAAAPRTETVRYEISQLKKMNVSRLRQVARGVSGLS
HCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
IPREAVKSANKKDLIDAIINSYRQIEE
CCHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]