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The map label for this gene is yqhC [H]

Identifier: 78358177

GI number: 78358177

Start: 3128276

End: 3129160

Strand: Reverse

Name: yqhC [H]

Synonym: Dde_3137

Alternate gene names: 78358177

Gene position: 3129160-3128276 (Counterclockwise)

Preceding gene: 78358183

Following gene: 78358175

Centisome position: 83.89

GC content: 49.27

Gene sequence:

>885_bases
ATGTCCGGTATGGTGAAACTGCTTGATGAGATTGCCGGTGTCGACGGCGGCGTTGTTGAGTCCAGGCTTCCAGGTGTCCG
TTTTTTTAAGGAGACAAGGCATGTAGCACGCAGGCCGATGCTGTATAATCCTGGAATATGTATAGTCGTATCAGGACATA
AAGTGGCGTATGTCGGCGGTCAGACTTTCAGATACGATGTGGATAACTATCTTGTGACTTCGGTCGCCATGCCGTTTGAG
TGCGAATCCTTTCCCAGTCAGGAAAACCCGTTACTGGGGATGTTTATCGACATTGACATCGGGCAGCTGAATAATCTGAT
AAGTATGATGGAAAGGCAGGATAATCCGTCTGTGGCAGTTTCTAACGGGCGGCAGCTTGCCATTGGCCCTTCGGCTATGG
ACGCGGATATGAAAGACGCTGCTGTGAAGTTGGTTAAAGCACTGCAGAGTGAACAGGAAGCCAGAATACTGGGGCCGGGG
CTGGTACGCGAGGTGTATTACAGAGCATTATGCGGAAATCAGGCTCCCGTGTTGTATTCTCTTGTGCGGGGAAGCGGTTC
TTTTTCGCAGGTGGCCAGAATTATACACATGATGGAAGGCAGCTACTCTGAAAAATTTGATATTCAGCAGCTTGCAGATT
CCGTGCATATGAGTGTTTCTGCTTTTCATAAGGCGTTCAAGGATATTACGGCAGATTCGCCGTTGCAGTATTTAAAGAAA
ATACGACTTTCGCGCGCCAGAGACCTTATCGTCCAGCAGGGAATGAAAGCTTATCTGGCAGCAGATGAGGTCGGATACGA
AAGTCCGTCTCAGTTCAGCCGCGAATTCAAACGTTATTTCGGGCGCAGTCCCGCAGAGCTAATGCGTGATGTCCGTTCAT
CGTAG

Upstream 100 bases:

>100_bases
CTCTTTAAAACTTGCCTAATCCTCTAACTGCGGCAGGGCGGGGTTGAAATTACATAGGATATGGTGTTTACACTGCATTG
CTGCGTATGGAGGAATATCT

Downstream 100 bases:

>100_bases
GGGCTTCGGGCTTTGCTACCGCAAGCCTGCAGGGTCAGGTGGGCGCCGTGCCAGCCGGGTCCGGCGCAGGGGGAAAATGA
TGCTTGTTCAGGCAAAAGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVVSGHKVAYVGGQTFRYDVDNYLVTSVAMPFE
CESFPSQENPLLGMFIDIDIGQLNNLISMMERQDNPSVAVSNGRQLAIGPSAMDADMKDAAVKLVKALQSEQEARILGPG
LVREVYYRALCGNQAPVLYSLVRGSGSFSQVARIIHMMEGSYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKK
IRLSRARDLIVQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS

Sequences:

>Translated_294_residues
MSGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVVSGHKVAYVGGQTFRYDVDNYLVTSVAMPFE
CESFPSQENPLLGMFIDIDIGQLNNLISMMERQDNPSVAVSNGRQLAIGPSAMDADMKDAAVKLVKALQSEQEARILGPG
LVREVYYRALCGNQAPVLYSLVRGSGSFSQVARIIHMMEGSYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKK
IRLSRARDLIVQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS
>Mature_293_residues
SGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVVSGHKVAYVGGQTFRYDVDNYLVTSVAMPFEC
ESFPSQENPLLGMFIDIDIGQLNNLISMMERQDNPSVAVSNGRQLAIGPSAMDADMKDAAVKLVKALQSEQEARILGPGL
VREVYYRALCGNQAPVLYSLVRGSGSFSQVARIIHMMEGSYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKKI
RLSRARDLIVQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=266, Percent_Identity=43.2330827067669, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1786496, Length=99, Percent_Identity=32.3232323232323, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32681; Mature: 32550

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVVSGHKVAYVGG
CCHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCEECCCEEEEECCCEEEEECC
QTFRYDVDNYLVTSVAMPFECESFPSQENPLLGMFIDIDIGQLNNLISMMERQDNPSVAV
CEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEE
SNGRQLAIGPSAMDADMKDAAVKLVKALQSEQEARILGPGLVREVYYRALCGNQAPVLYS
CCCCEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
LVRGSGSFSQVARIIHMMEGSYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKK
HHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
IRLSRARDLIVQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
SGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVVSGHKVAYVGG
CHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCEECCCEEEEECCCEEEEECC
QTFRYDVDNYLVTSVAMPFECESFPSQENPLLGMFIDIDIGQLNNLISMMERQDNPSVAV
CEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEE
SNGRQLAIGPSAMDADMKDAAVKLVKALQSEQEARILGPGLVREVYYRALCGNQAPVLYS
CCCCEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
LVRGSGSFSQVARIIHMMEGSYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKK
HHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
IRLSRARDLIVQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]