Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
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Accession | NC_007519 |
Length | 3,730,232 |
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The map label for this gene is fabF [H]
Identifier: 78357702
GI number: 78357702
Start: 2673049
End: 2674377
Strand: Direct
Name: fabF [H]
Synonym: Dde_2660
Alternate gene names: 78357702
Gene position: 2673049-2674377 (Clockwise)
Preceding gene: 78357701
Following gene: 78357703
Centisome position: 71.66
GC content: 65.24
Gene sequence:
>1329_bases ATGAAAAGGCTCCGAGCCATGCAGGCTGAACGCAGAGTGGTCATCACCGGCGCCGGTGCCGTCACCCCGCTGGGGCATAC GCCACAGGACATCCGGCAGTCGGTGCTGACCGGCCGCACCGTATTTGAACCTACTTCCGTGCCGGCGGGGTATGCACAGG CACCGGCGCAGTTCGATGCCGACGATGCACTGCGGGGCTGGCGGCACCGGCGCTATCTTAACCGCGGTGCGGCCATGGCC GTGCATGCCGCACGTCAGGCTGCCGGAGCTGCCGGTTTTGCTGCGGGTCTGCCCGGATACTGCGGAATATTCGCCGGAAG CGGTCCGCATCTGGATATGGACAGCGACTACGCACAGCCGCAGCACCTTCCGCAACGGCATGATACGCTTTGTGCCTTAT GGATGCTGCGCTATCTGCCCAACACGGCAGCTTCGGCCATCAGCCAGTTGCTGGGCGCCCGCGGCGAAAGTCTGGTGACC GGTACTGCCTGCGCGGCCTCGCTGCAGGCAGTGGGAGAGGCCTTCCGCCGCATCCGCCACGGGGTACTGCCTGTGGCGCT GGCCGGCGGAGGCGATTCGCGCCTGTCATACGGCGGCCTTTTGGCCTATGCCAAGGCGGGCGCACTGGCTCCGTGTTCTG AAGACACTCATGCCGCAGCAGCAGCGGCATGCAGGCCCTTTGACACCGGTCGGCAGGGATTTGCAGCAGGTGAAGGAGCC GCTTTTTTTGTACTGGAATCGCTGGACCATGCGCAAAAACGCGGCGCTGTTCCGCTGGCTGAAGTATGCGGATACGGCTG CAGCATGGACGGCCACGCCATGACCGCACCGCACCCGCAGGGCATGCACGCGGAACAGGCTGTCAGAACCGCTCTGCATG AAGCAGGGGCCGGACCGGCCGATGTGACCGCCGTCTGTGCACACGGTACGGGTACGCGGCGCAACGACACCGCCGAATCA GTCATGCTCACGCGGCTTTTTGCCCCGACCGGACACCGGCCGCCGGTTCTTGCCCTCAAATCATGGACAGGACACTGCGC CTCTGCCTGCGGTGCCGTGGAACTGGCCGTACTGCTGGCCTGTGCCCGGCACGGTTTTCTGCCCCCCGTGCGCAACCTGC AGACTCCGCTGTGCGACAGTCTCTCGTTTGTCCGCCGCATTCACCCGTGCACCGCTGCAGAGCTGTACGCTGCCGGACGT CCGGAAAAGCTTTCCGCCCTGACGCTTCTGCAGAGCTTCGGGTTCGGCGGCCAGAACGCCGCGCTGGCGGTACGTCCCTT CCGCGCATCAACCGCCGCGGCAATACAGGATGACAATATACCGGCATGA
Upstream 100 bases:
>100_bases GACCGCGTGGCCTGCATACTCCGCACACTGGATGATGGGCCCGTGCTGAGCGTACAGGATATTGCGGATTACGTGCTGCA CGCCCTGCGCGCCGGACAGC
Downstream 100 bases:
>100_bases AACATAAAAACACTATCACGCTGCGCTGCAACGCCGCTCCGGCGCCGGAAACGCTCCATACGCCGGCCACGGCCCTGTTC GTTGTACCCGCCGCGGTAAG
Product: beta-ketoacyl synthase
Products: NA
Alternate protein names: 3-oxoacyl-[acyl-carrier-protein] synthase II; Beta-ketoacyl-ACP synthase II; KAS II [H]
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MKRLRAMQAERRVVITGAGAVTPLGHTPQDIRQSVLTGRTVFEPTSVPAGYAQAPAQFDADDALRGWRHRRYLNRGAAMA VHAARQAAGAAGFAAGLPGYCGIFAGSGPHLDMDSDYAQPQHLPQRHDTLCALWMLRYLPNTAASAISQLLGARGESLVT GTACAASLQAVGEAFRRIRHGVLPVALAGGGDSRLSYGGLLAYAKAGALAPCSEDTHAAAAAACRPFDTGRQGFAAGEGA AFFVLESLDHAQKRGAVPLAEVCGYGCSMDGHAMTAPHPQGMHAEQAVRTALHEAGAGPADVTAVCAHGTGTRRNDTAES VMLTRLFAPTGHRPPVLALKSWTGHCASACGAVELAVLLACARHGFLPPVRNLQTPLCDSLSFVRRIHPCTAAELYAAGR PEKLSALTLLQSFGFGGQNAALAVRPFRASTAAAIQDDNIPA
Sequences:
>Translated_442_residues MKRLRAMQAERRVVITGAGAVTPLGHTPQDIRQSVLTGRTVFEPTSVPAGYAQAPAQFDADDALRGWRHRRYLNRGAAMA VHAARQAAGAAGFAAGLPGYCGIFAGSGPHLDMDSDYAQPQHLPQRHDTLCALWMLRYLPNTAASAISQLLGARGESLVT GTACAASLQAVGEAFRRIRHGVLPVALAGGGDSRLSYGGLLAYAKAGALAPCSEDTHAAAAAACRPFDTGRQGFAAGEGA AFFVLESLDHAQKRGAVPLAEVCGYGCSMDGHAMTAPHPQGMHAEQAVRTALHEAGAGPADVTAVCAHGTGTRRNDTAES VMLTRLFAPTGHRPPVLALKSWTGHCASACGAVELAVLLACARHGFLPPVRNLQTPLCDSLSFVRRIHPCTAAELYAAGR PEKLSALTLLQSFGFGGQNAALAVRPFRASTAAAIQDDNIPA >Mature_442_residues MKRLRAMQAERRVVITGAGAVTPLGHTPQDIRQSVLTGRTVFEPTSVPAGYAQAPAQFDADDALRGWRHRRYLNRGAAMA VHAARQAAGAAGFAAGLPGYCGIFAGSGPHLDMDSDYAQPQHLPQRHDTLCALWMLRYLPNTAASAISQLLGARGESLVT GTACAASLQAVGEAFRRIRHGVLPVALAGGGDSRLSYGGLLAYAKAGALAPCSEDTHAAAAAACRPFDTGRQGFAAGEGA AFFVLESLDHAQKRGAVPLAEVCGYGCSMDGHAMTAPHPQGMHAEQAVRTALHEAGAGPADVTAVCAHGTGTRRNDTAES VMLTRLFAPTGHRPPVLALKSWTGHCASACGAVELAVLLACARHGFLPPVRNLQTPLCDSLSFVRRIHPCTAAELYAAGR PEKLSALTLLQSFGFGGQNAALAVRPFRASTAAAIQDDNIPA
Specific function: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP [H]
COG id: COG0304
COG function: function code IQ; 3-oxoacyl-(acyl-carrier-protein) synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the beta-ketoacyl-ACP synthases family [H]
Homologues:
Organism=Homo sapiens, GI8923559, Length=431, Percent_Identity=32.9466357308585, Blast_Score=166, Evalue=4e-41, Organism=Homo sapiens, GI41872631, Length=286, Percent_Identity=27.972027972028, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI223972627, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI1787337, Length=430, Percent_Identity=29.5348837209302, Blast_Score=148, Evalue=9e-37, Organism=Escherichia coli, GI1788663, Length=431, Percent_Identity=27.1461716937355, Blast_Score=120, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71983541, Length=418, Percent_Identity=28.7081339712919, Blast_Score=138, Evalue=6e-33, Organism=Caenorhabditis elegans, GI71983535, Length=275, Percent_Identity=32.7272727272727, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI212642053, Length=306, Percent_Identity=26.797385620915, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17550940, Length=349, Percent_Identity=25.5014326647564, Blast_Score=86, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6320904, Length=463, Percent_Identity=28.7257019438445, Blast_Score=149, Evalue=7e-37, Organism=Drosophila melanogaster, GI24644341, Length=440, Percent_Identity=32.5, Blast_Score=180, Evalue=2e-45, Organism=Drosophila melanogaster, GI19920632, Length=284, Percent_Identity=27.112676056338, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI221330659, Length=284, Percent_Identity=27.112676056338, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24581345, Length=285, Percent_Identity=27.0175438596491, Blast_Score=84, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017568 - InterPro: IPR000794 - InterPro: IPR018201 - InterPro: IPR014031 - InterPro: IPR014030 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF00109 ketoacyl-synt; PF02801 Ketoacyl-synt_C [H]
EC number: =2.3.1.179 [H]
Molecular weight: Translated: 45988; Mature: 45988
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: PS00606 B_KETOACYL_SYNTHASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLRAMQAERRVVITGAGAVTPLGHTPQDIRQSVLTGRTVFEPTSVPAGYAQAPAQFDA CCHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCH DDALRGWRHRRYLNRGAAMAVHAARQAAGAAGFAAGLPGYCGIFAGSGPHLDMDSDYAQP HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCCCHHEEECCCCCCCCCCCCCCCC QHLPQRHDTLCALWMLRYLPNTAASAISQLLGARGESLVTGTACAASLQAVGEAFRRIRH CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH GVLPVALAGGGDSRLSYGGLLAYAKAGALAPCSEDTHAAAAAACRPFDTGRQGFAAGEGA CCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC AFFVLESLDHAQKRGAVPLAEVCGYGCSMDGHAMTAPHPQGMHAEQAVRTALHEAGAGPA HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC DVTAVCAHGTGTRRNDTAESVMLTRLFAPTGHRPPVLALKSWTGHCASACGAVELAVLLA CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH CARHGFLPPVRNLQTPLCDSLSFVRRIHPCTAAELYAAGRPEKLSALTLLQSFGFGGQNA HHHCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC ALAVRPFRASTAAAIQDDNIPA EEEEECCCCCCHHHCCCCCCCC >Mature Secondary Structure MKRLRAMQAERRVVITGAGAVTPLGHTPQDIRQSVLTGRTVFEPTSVPAGYAQAPAQFDA CCHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCH DDALRGWRHRRYLNRGAAMAVHAARQAAGAAGFAAGLPGYCGIFAGSGPHLDMDSDYAQP HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCCCHHEEECCCCCCCCCCCCCCCC QHLPQRHDTLCALWMLRYLPNTAASAISQLLGARGESLVTGTACAASLQAVGEAFRRIRH CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH GVLPVALAGGGDSRLSYGGLLAYAKAGALAPCSEDTHAAAAAACRPFDTGRQGFAAGEGA CCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC AFFVLESLDHAQKRGAVPLAEVCGYGCSMDGHAMTAPHPQGMHAEQAVRTALHEAGAGPA HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC DVTAVCAHGTGTRRNDTAESVMLTRLFAPTGHRPPVLALKSWTGHCASACGAVELAVLLA CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH CARHGFLPPVRNLQTPLCDSLSFVRRIHPCTAAELYAAGRPEKLSALTLLQSFGFGGQNA HHHCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC ALAVRPFRASTAAAIQDDNIPA EEEEECCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]