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The map label for this gene is rfbA [H]

Identifier: 78355888

GI number: 78355888

Start: 870886

End: 871722

Strand: Direct

Name: rfbA [H]

Synonym: Dde_0841

Alternate gene names: 78355888

Gene position: 870886-871722 (Clockwise)

Preceding gene: 78355887

Following gene: 78355889

Centisome position: 23.35

GC content: 55.32

Gene sequence:

>837_bases
ATGAACAAGACCGATGCACGCTACAGGGTTGTGCTTGAGCAGCGTAAAGGAATGCGCAGTATAAATCTTCAGGAACTCTG
GGAATACAGGGATCTTCTGATGTTTCTGGTATGGCGCAGTATCCGGGTGCGCTATGCGCAGTCGCTGCTCGGGGTGGGGT
GGGCCATTGTGCAGCCGCTTTTTTCCATGGTGGTGTTCACCATTGTGTTCGGCAGGCTGGCCAAGGTCGACTCCGACGGG
GTGCCCTACGCTGTGTTCAGTTTCACGGCACTGGTGCCGTGGACATATTTTGCCAATGCGCTGACAGAAAGCGCGGGCAG
TCTGGTCAGCAACGCCAATATGATACGCAAGGTTTATTTTCCGCGTCTGGTGCTGCCTCTTTCGGCCGTGGTGGCAAAGC
TGGTCGATTTCTCCATCGCCATGGTCATGCTTTTTGGCATTATGCTGTGGTATAAGGTGGTGCCCACCTGGGGCGTGCTG
TATCTGCCGTTTCTGGTGGTGCTGATGATGCTTACAGCCGCAGGCATAGGCACATGGCTGACTGCTTTGGCCATTCAGTA
CCGCGATGTGCATTACTCGCTCAATTTTGTCGTGCAGCTGCTCATGTATGCCGCACCGGTGGTGTATCCGGTGTCGCTTG
TTCCCGAAGAGTACCGGCTGCTGTACGGCTGCAATCCGATGGTAGGAGTCATCGAGGGATTCCGTTCCGCACTGCTGGGC
ACTGTGCCCATGCCGTGGGACCTGCTTGGGCTGGGGGGCGGATTGTCACTTTTTCTTTGTGTCACCGGTGCGCTGTACTT
CCGCAGCAAAGAAAAAATATTCGCTGATGTGGCATAG

Upstream 100 bases:

>100_bases
ATGGCAACCCCCACTGTACGCTGGATGATGAGCGGCATCGGTGACCCGCTGTACAGGCTGCCGGACACAAAATAAACAAG
AACAGACAGGTATTTTTCAG

Downstream 100 bases:

>100_bases
GCTGCGGCGCGTAAGGCAGGAATACCATGCTTGACAGACGGCAGACACAAGCGGCGCTGCAGCAATGCCTGCGACAGCCC
GTGTTTATACTGGCGCGTGA

Product: polysaccharide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNKTDARYRVVLEQRKGMRSINLQELWEYRDLLMFLVWRSIRVRYAQSLLGVGWAIVQPLFSMVVFTIVFGRLAKVDSDG
VPYAVFSFTALVPWTYFANALTESAGSLVSNANMIRKVYFPRLVLPLSAVVAKLVDFSIAMVMLFGIMLWYKVVPTWGVL
YLPFLVVLMMLTAAGIGTWLTALAIQYRDVHYSLNFVVQLLMYAAPVVYPVSLVPEEYRLLYGCNPMVGVIEGFRSALLG
TVPMPWDLLGLGGGLSLFLCVTGALYFRSKEKIFADVA

Sequences:

>Translated_278_residues
MNKTDARYRVVLEQRKGMRSINLQELWEYRDLLMFLVWRSIRVRYAQSLLGVGWAIVQPLFSMVVFTIVFGRLAKVDSDG
VPYAVFSFTALVPWTYFANALTESAGSLVSNANMIRKVYFPRLVLPLSAVVAKLVDFSIAMVMLFGIMLWYKVVPTWGVL
YLPFLVVLMMLTAAGIGTWLTALAIQYRDVHYSLNFVVQLLMYAAPVVYPVSLVPEEYRLLYGCNPMVGVIEGFRSALLG
TVPMPWDLLGLGGGLSLFLCVTGALYFRSKEKIFADVA
>Mature_278_residues
MNKTDARYRVVLEQRKGMRSINLQELWEYRDLLMFLVWRSIRVRYAQSLLGVGWAIVQPLFSMVVFTIVFGRLAKVDSDG
VPYAVFSFTALVPWTYFANALTESAGSLVSNANMIRKVYFPRLVLPLSAVVAKLVDFSIAMVMLFGIMLWYKVVPTWGVL
YLPFLVVLMMLTAAGIGTWLTALAIQYRDVHYSLNFVVQLLMYAAPVVYPVSLVPEEYRLLYGCNPMVGVIEGFRSALLG
TVPMPWDLLGLGGGLSLFLCVTGALYFRSKEKIFADVA

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31288; Mature: 31288

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTDARYRVVLEQRKGMRSINLQELWEYRDLLMFLVWRSIRVRYAQSLLGVGWAIVQPL
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMVVFTIVFGRLAKVDSDGVPYAVFSFTALVPWTYFANALTESAGSLVSNANMIRKVYF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PRLVLPLSAVVAKLVDFSIAMVMLFGIMLWYKVVPTWGVLYLPFLVVLMMLTAAGIGTWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALAIQYRDVHYSLNFVVQLLMYAAPVVYPVSLVPEEYRLLYGCNPMVGVIEGFRSALLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHC
TVPMPWDLLGLGGGLSLFLCVTGALYFRSKEKIFADVA
CCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCC
>Mature Secondary Structure
MNKTDARYRVVLEQRKGMRSINLQELWEYRDLLMFLVWRSIRVRYAQSLLGVGWAIVQPL
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMVVFTIVFGRLAKVDSDGVPYAVFSFTALVPWTYFANALTESAGSLVSNANMIRKVYF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PRLVLPLSAVVAKLVDFSIAMVMLFGIMLWYKVVPTWGVLYLPFLVVLMMLTAAGIGTWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALAIQYRDVHYSLNFVVQLLMYAAPVVYPVSLVPEEYRLLYGCNPMVGVIEGFRSALLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHC
TVPMPWDLLGLGGGLSLFLCVTGALYFRSKEKIFADVA
CCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]