Definition Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession NC_007519
Length 3,730,232

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The map label for this gene is capK [H]

Identifier: 78355883

GI number: 78355883

Start: 862776

End: 864185

Strand: Direct

Name: capK [H]

Synonym: Dde_0836

Alternate gene names: 78355883

Gene position: 862776-864185 (Clockwise)

Preceding gene: 78355882

Following gene: 78355884

Centisome position: 23.13

GC content: 58.37

Gene sequence:

>1410_bases
ATGTCTGATTCCGCAGAGACTGTCCGCACCAATGCACCGGACTGGTTTTCGTATGTGGCACGCCACGTTATTGCTCCCAT
GTGGGCGGTGTACGAACATTCACCGTATCTGCGTCACCTGAAAACCGTCAGTGCAAACCAGTACCGTCCGCTTGACGAAA
TGCGCGCGCTGCAGTGGGAACGCCTGCGCGGTCTCTTGCGGCATGCGGCTGCTCATGTGCCTTACTACCGTGCTCTATGG
GCTGCACAGGGCATAGATGCCGACAGCGTGCGCAGCTGGGATGATTTTTACGCACTGCCGGTGCTGGAAAAAGAACACAT
CCGCTCTGCGGGCAGGACCCTGCTGGCCGGTAATGTGCCGGAGGACAAACTTGTCTGGACAAAAACATCCGGTTCAACAG
GTGTTTCGCTGGAAATAGCCAAGGATGAAGCCAGCCAGCAGTGGAAAAGAGCCTGCACCCTGCGCCATGACATGTGGGCG
GGCTGGCGTCTGGGCGAACGTGTGGGCGCTGTGTGGGGCAATCCTGAAAGTTCGCAGAACTGGCGCCTCTGGCTGCGTAA
TCTGCTGCTGCAGCGCATGACCTTTCTGGACACGCTGCGGATGGATGAAGCGGCCATGAACAATTTTCACCGTACGCTGC
TGCGCGTGCGGCCGGTGCTGCTCTTCGGCCATGCCCATTCTCTGTACCTTTTTGCTTCGTTCATGAAGGCCCGCGGGCTG
TCCGGCATTTATCCGCGGGGTATCATCAGCACGGCCATGGTGCTGCACGATTTTGAACGCGCCATGGTGGAGGATGTGTT
CCGCTGCAAAGTGACCAACCGCTACGGTTGCGAAGAGGTCAGTCTCATTGCCTGCGAATGCGAGCAGCATCAGGGGCTGC
ATGTAAATATGGACACGCTGGTGGTGGAATGTGTGGATGCCGATGGCAGGCCGGTACCTGAGGGTGAACCCGGAGCAGTG
GTGGTAACTGACCTGAGCAACCTTGCCATGCCTTTCATCCGCTACCGCGTGGGTGATGTTTCACGGTTTATGGCCGGTAC
CTGCGCCTGCGGACGCAGCTATCCGCGGCTTGCCGCGGTGGAGGGCAGAATAGCCGACTACGTGCGCACGCCGCAGGGAG
AGTTTATTTCCGGCATTTCGCTGACCGAAAATTTCGCCATGAAGCTTTCCGGCGTAAAGCAGCTGCAGATTGTGCAGGAA
GAGCTGGATTATCTGGTGTTCCGCATGGTGCGCGGCGCCGACTGGCAGGATAGCGAGCTGGAGACTCTGGCGCAGCTGGT
GCGGACCCGTTTCGGCCGGAGCATGCGGTACGACGTGGAGTTTACAGACTCCATACAGTCGGAAAGCAGCGGTAAGTTCC
GGTTCTGTATTTCCCGACTGGCCGAAAAACCGTTTTCACCGGGAGCATAG

Upstream 100 bases:

>100_bases
AGTTTTGCCCCCATGGCGCAGGTGCTTGAAGACACGCTGGGCGCCGGCACAATGCAGACAGTATCTGCACCGCAGGGCAG
CTTTTCAGGAGAAAACGCGC

Downstream 100 bases:

>100_bases
CCTGTGCTGTACGCGTTTTTATGCCTGATTCTGGCATTTGCCACGGCCGCCACAGCATGGCTTGCGCTGCTGGCGGTGCT
TGGCTGGCGGCCATGCGTGC

Product: CapK related-protein

Products: AMP; Phenylacetyl-CoA; Diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALW
AAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWA
GWRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL
SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAV
VVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQE
ELDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA

Sequences:

>Translated_469_residues
MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALW
AAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWA
GWRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL
SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAV
VVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQE
ELDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA
>Mature_468_residues
SDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALWA
AQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAG
WRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGLS
GIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAVV
VTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEE
LDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1541

COG function: function code H; Coenzyme F390 synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.2.1.30 [C]

Molecular weight: Translated: 53386; Mature: 53254

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWE
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
RLRGLLRHAAAHVPYYRALWAAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVP
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCHHHEECCCCCHHHHHHHCCEEEECCCC
EDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAGWRLGERVGAVWGNPESSQN
CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCH
WRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCC
SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCCEEEHHHE
VVECVDADGRPVPEGEPGAVVVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAV
EEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEELDYLVFRMVRGADWQDSEL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA
HHHHHHHHHHCCCCEEECEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWE
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
RLRGLLRHAAAHVPYYRALWAAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVP
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCHHHEECCCCCHHHHHHHCCEEEECCCC
EDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAGWRLGERVGAVWGNPESSQN
CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCH
WRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCC
SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCCEEEHHHE
VVECVDADGRPVPEGEPGAVVVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAV
EEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEELDYLVFRMVRGADWQDSEL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA
HHHHHHHHHHCCCCEEECEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; Coenzyme A; Phenylacetic acid [C]

Specific reaction: ATP + Coenzyme A + Phenylacetic acid --> AMP + Phenylacetyl-CoA + Diphosphate [C]

General reaction: Forming of carbon sulfur bond [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]