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The map label for this gene is yccZ [C]

Identifier: 78355877

GI number: 78355877

Start: 855893

End: 856702

Strand: Direct

Name: yccZ [C]

Synonym: Dde_0830

Alternate gene names: 78355877

Gene position: 855893-856702 (Clockwise)

Preceding gene: 78355876

Following gene: 78355878

Centisome position: 22.94

GC content: 57.78

Gene sequence:

>810_bases
GTGAAAAAGGTACTGCTGTTGTTGGTTGTTGTGCTGCTTTTTGGCGCCGTAGCGGCTCAGGCCGCGGACGGTGAATACGT
CATCGGCAGCGGCGACGGGCTGCTTGTCAACGTGTGGGGCGAGCAGGAGCTTAATGTGGCCATAGCAGTCCGGCCGGACG
GCATGATAACCGTGCCCGGCGTGGGTGAGGTTATGGCGCAGGGCAAAACGCCTCAGCAGCTGACCACAGAACTGTCGCGC
AAGCTTGCCGAACTGGTACGCAACCCCATTGTAACCGTAAGCGTGACACAGGTGCGCAACAATTCGGTCACGGTGCACGG
TGCGGGGGTGCAGGCGGCCGTGGTGCCGCTGGAACGCAGCACCACCCTGCTGGAGCTGCTGGCGCAGCTGTCTCCGGGAG
ATACGGCAGACTTTGACAATGCCTACCTTTCCCGTCAGGGGCGCAGAATAGTCTCCGGTTTTACCGGCCTGTTTGTAAAA
GGCGAAACGGAAAACGATGTGGCTTTGCAGCCGGGGGACAGAATCTTCATTCCGTACCGTGCCGACCGCAATGTTTTTGT
AATGGGCGCGGTGAACAACCCCATGGCCATTCCTCACCACGACGGGCTGAGCGTGCTTGAAGCGCTGCTTGAGGCAGGCA
GTTTCAACAAATTTGCCGACAGGAACAATACAGTGATAGTACGGCATGACGGGGTGGAAAAAAAATCCATTGCCGTGCGC
GGCGGCGATCTGGTGAACGACGGCGACCTGACCCAGAATCTGGAATTGCAGCCGGGTGACTACGTAATAGTGAAAAAGAG
CTTTTTCTAG

Upstream 100 bases:

>100_bases
GCTATGACCTGTACTACATAAAAAACTATTCTATTCTCTTTGATTTACGTATCATGCTCGATACCGTGGGTGTTGTTCTT
TTCCGCAAGGGAGGCCGCTA

Downstream 100 bases:

>100_bases
CGGATTCGCGGGGTCTTCATGAACACAATGCTGGATGATGTCGAGGCCGGTGGCGGCCTCGACATACTGCGTTATATACG
GTTGCTCTGGGAGCATGCTC

Product: capsular polysaccharide transport protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKKVLLLLVVVLLFGAVAAQAADGEYVIGSGDGLLVNVWGEQELNVAIAVRPDGMITVPGVGEVMAQGKTPQQLTTELSR
KLAELVRNPIVTVSVTQVRNNSVTVHGAGVQAAVVPLERSTTLLELLAQLSPGDTADFDNAYLSRQGRRIVSGFTGLFVK
GETENDVALQPGDRIFIPYRADRNVFVMGAVNNPMAIPHHDGLSVLEALLEAGSFNKFADRNNTVIVRHDGVEKKSIAVR
GGDLVNDGDLTQNLELQPGDYVIVKKSFF

Sequences:

>Translated_269_residues
MKKVLLLLVVVLLFGAVAAQAADGEYVIGSGDGLLVNVWGEQELNVAIAVRPDGMITVPGVGEVMAQGKTPQQLTTELSR
KLAELVRNPIVTVSVTQVRNNSVTVHGAGVQAAVVPLERSTTLLELLAQLSPGDTADFDNAYLSRQGRRIVSGFTGLFVK
GETENDVALQPGDRIFIPYRADRNVFVMGAVNNPMAIPHHDGLSVLEALLEAGSFNKFADRNNTVIVRHDGVEKKSIAVR
GGDLVNDGDLTQNLELQPGDYVIVKKSFF
>Mature_269_residues
MKKVLLLLVVVLLFGAVAAQAADGEYVIGSGDGLLVNVWGEQELNVAIAVRPDGMITVPGVGEVMAQGKTPQQLTTELSR
KLAELVRNPIVTVSVTQVRNNSVTVHGAGVQAAVVPLERSTTLLELLAQLSPGDTADFDNAYLSRQGRRIVSGFTGLFVK
GETENDVALQPGDRIFIPYRADRNVFVMGAVNNPMAIPHHDGLSVLEALLEAGSFNKFADRNNTVIVRHDGVEKKSIAVR
GGDLVNDGDLTQNLELQPGDYVIVKKSFF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=224, Percent_Identity=30.3571428571429, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788376, Length=211, Percent_Identity=29.8578199052133, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 28854; Mature: 28854

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLLLLVVVLLFGAVAAQAADGEYVIGSGDGLLVNVWGEQELNVAIAVRPDGMITVPG
CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCEEECCC
VGEVMAQGKTPQQLTTELSRKLAELVRNPIVTVSVTQVRNNSVTVHGAGVQAAVVPLERS
CHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCEEEEEECCCC
TTLLELLAQLSPGDTADFDNAYLSRQGRRIVSGFTGLFVKGETENDVALQPGDRIFIPYR
HHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCCCCEEECCCCEEEEEEE
ADRNVFVMGAVNNPMAIPHHDGLSVLEALLEAGSFNKFADRNNTVIVRHDGVEKKSIAVR
CCCCEEEEEECCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEE
GGDLVNDGDLTQNLELQPGDYVIVKKSFF
CCCEECCCCCCCCEEECCCCEEEEEECCC
>Mature Secondary Structure
MKKVLLLLVVVLLFGAVAAQAADGEYVIGSGDGLLVNVWGEQELNVAIAVRPDGMITVPG
CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCEEECCC
VGEVMAQGKTPQQLTTELSRKLAELVRNPIVTVSVTQVRNNSVTVHGAGVQAAVVPLERS
CHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCEEEEEECCCC
TTLLELLAQLSPGDTADFDNAYLSRQGRRIVSGFTGLFVKGETENDVALQPGDRIFIPYR
HHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCCCCEEECCCCEEEEEEE
ADRNVFVMGAVNNPMAIPHHDGLSVLEALLEAGSFNKFADRNNTVIVRHDGVEKKSIAVR
CCCCEEEEEECCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEE
GGDLVNDGDLTQNLELQPGDYVIVKKSFF
CCCEECCCCCCCCEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]