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The map label for this gene is rnfD [H]

Identifier: 78355629

GI number: 78355629

Start: 606548

End: 607507

Strand: Direct

Name: rnfD [H]

Synonym: Dde_0582

Alternate gene names: 78355629

Gene position: 606548-607507 (Clockwise)

Preceding gene: 78355628

Following gene: 78355630

Centisome position: 16.26

GC content: 60.73

Gene sequence:

>960_bases
ATGGCAAACGAATCATTGGCCAAAGCCCCGTTTCTCGCCGTCGGGGCGGCTCCGCACTGGCATTGCGGGCGCACCATACA
CGGCATGATGCGGGATTATCTTATCGCCCTGATGCCCGCGGTGGCCATGGCCGTCTATATGTACGGTCTGGACGCGCTGC
GGGTTATGGCCCTTTCATGCGTGACTGCGGTGGTTATAGAGGCCGTGTGCCTGAAAGCCATGGAGCGCGATGTCACGGTG
GACGACAACAGTGCCCTGTTGCAGGGGCTGCTGCTGGCTTTTCTGCTGCCTGCCTCCGCCCCGTGGTGGCTGGTTATTCT
GGGCAGCGCCTTCACAATTTTACTCGGACGTCTGGTCTTCGGCGGACTGGGGGCAAACCCCGTATGTGCGCCGCTGGTGG
GCTGGGCCATTCTTTCCATTTCGTGGAAGCTGGAAATGGATATCGACGCGGCCATGCTTAACACCATGCTGGTCAACCCG
CTTACGCAGCTGAAGTATTTCGGTGCGCAGAAAGTGGCGGACATCAGCTACACCGGCCTGCTGGCCGGACAGCAGCTGGG
GGCTCTGGGCTCTTCGCAGGTGGGCGCGCTGCTGCTGGGCGGAATATATCTGCTGGTGCGGCGCACCGTGCGCTGGCAGC
TGCCCGCGGCATTCTTCGGCGGCGTGCTGCTGATTTCAGGCATTTTCTACGCCATAGACAGCAGCCAGTACGCTTCGCCT
CTTTTCCATCTGCTCACAGGCAGTGTGGTGTTCGGCGCCTTCTTTCTGGTGACGGACTCTTCCTCTTCTCCCGTGGGCAA
GGCCGCCATGGTCATCTTCGGCCTGCTGGCCGGAGGTATGGTGGTAACCATCAGGGTCTACGGCATGTATCCCGACGGCG
TGCCCTTTGCCATTCTGCTGGCAAACATGACATCGCCGCTGCTGGATATGATCCGCCCCAAGCCTTTCGGAGCGAGGTAA

Upstream 100 bases:

>100_bases
AGCTTATCCAGCTGGCAAAACATCAGATCGTGCTTCAGGAGCAGCAGGTGACCGCCTGTTCCCTGCAGGGCGAGACCAAG
TAGACAGGGGGTAACAGCAA

Downstream 100 bases:

>100_bases
GCCATGCGTGAAATCATTAAAATGATCGTGGTGCTTTCCACAATCTGCGTCATATCGGGCTTTGCCCTTTCTTCGCTGAA
AAAACTGACCGCCCCCCAGA

Product: RnfABCDGE type electron transport complex, D subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MANESLAKAPFLAVGAAPHWHCGRTIHGMMRDYLIALMPAVAMAVYMYGLDALRVMALSCVTAVVIEAVCLKAMERDVTV
DDNSALLQGLLLAFLLPASAPWWLVILGSAFTILLGRLVFGGLGANPVCAPLVGWAILSISWKLEMDIDAAMLNTMLVNP
LTQLKYFGAQKVADISYTGLLAGQQLGALGSSQVGALLLGGIYLLVRRTVRWQLPAAFFGGVLLISGIFYAIDSSQYASP
LFHLLTGSVVFGAFFLVTDSSSSPVGKAAMVIFGLLAGGMVVTIRVYGMYPDGVPFAILLANMTSPLLDMIRPKPFGAR

Sequences:

>Translated_319_residues
MANESLAKAPFLAVGAAPHWHCGRTIHGMMRDYLIALMPAVAMAVYMYGLDALRVMALSCVTAVVIEAVCLKAMERDVTV
DDNSALLQGLLLAFLLPASAPWWLVILGSAFTILLGRLVFGGLGANPVCAPLVGWAILSISWKLEMDIDAAMLNTMLVNP
LTQLKYFGAQKVADISYTGLLAGQQLGALGSSQVGALLLGGIYLLVRRTVRWQLPAAFFGGVLLISGIFYAIDSSQYASP
LFHLLTGSVVFGAFFLVTDSSSSPVGKAAMVIFGLLAGGMVVTIRVYGMYPDGVPFAILLANMTSPLLDMIRPKPFGAR
>Mature_318_residues
ANESLAKAPFLAVGAAPHWHCGRTIHGMMRDYLIALMPAVAMAVYMYGLDALRVMALSCVTAVVIEAVCLKAMERDVTVD
DNSALLQGLLLAFLLPASAPWWLVILGSAFTILLGRLVFGGLGANPVCAPLVGWAILSISWKLEMDIDAAMLNTMLVNPL
TQLKYFGAQKVADISYTGLLAGQQLGALGSSQVGALLLGGIYLLVRRTVRWQLPAAFFGGVLLISGIFYAIDSSQYASPL
FHLLTGSVVFGAFFLVTDSSSSPVGKAAMVIFGLLAGGMVVTIRVYGMYPDGVPFAILLANMTSPLLDMIRPKPFGAR

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=33.9031339031339, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33906; Mature: 33775

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANESLAKAPFLAVGAAPHWHCGRTIHGMMRDYLIALMPAVAMAVYMYGLDALRVMALSC
CCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTAVVIEAVCLKAMERDVTVDDNSALLQGLLLAFLLPASAPWWLVILGSAFTILLGRLVF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GGLGANPVCAPLVGWAILSISWKLEMDIDAAMLNTMLVNPLTQLKYFGAQKVADISYTGL
CCCCCCCHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHH
LAGQQLGALGSSQVGALLLGGIYLLVRRTVRWQLPAAFFGGVLLISGIFYAIDSSQYASP
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
LFHLLTGSVVFGAFFLVTDSSSSPVGKAAMVIFGLLAGGMVVTIRVYGMYPDGVPFAILL
HHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHH
ANMTSPLLDMIRPKPFGAR
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANESLAKAPFLAVGAAPHWHCGRTIHGMMRDYLIALMPAVAMAVYMYGLDALRVMALSC
CCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTAVVIEAVCLKAMERDVTVDDNSALLQGLLLAFLLPASAPWWLVILGSAFTILLGRLVF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GGLGANPVCAPLVGWAILSISWKLEMDIDAAMLNTMLVNPLTQLKYFGAQKVADISYTGL
CCCCCCCHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHH
LAGQQLGALGSSQVGALLLGGIYLLVRRTVRWQLPAAFFGGVLLISGIFYAIDSSQYASP
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
LFHLLTGSVVFGAFFLVTDSSSSPVGKAAMVIFGLLAGGMVVTIRVYGMYPDGVPFAILL
HHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHH
ANMTSPLLDMIRPKPFGAR
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA