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The map label for this gene is rnfC [H]

Identifier: 78355628

GI number: 78355628

Start: 605334

End: 606530

Strand: Direct

Name: rnfC [H]

Synonym: Dde_0581

Alternate gene names: 78355628

Gene position: 605334-606530 (Clockwise)

Preceding gene: 78355627

Following gene: 78355629

Centisome position: 16.23

GC content: 58.98

Gene sequence:

>1197_bases
ATGAGTACTACTCCCTTTGCTCTCATCTGCGGCGACAGGAGCGCATTTATCAACGGGCCGGAGCCTGCTGAGGTGCGCAT
ACCCTTAAGTGGTCACGGTCAGAAGGCCGTGAAGAAAAAAGCCCAGGTCCATACCGGAATGCTGGTGGCCGATCACCCCG
GCGACAAGCGCGGAGAGGCGCACAGCTCCATATGCGGTGTTGTGGCCGAAGTTACTCCGGAATGTGTGGTCATAACGGCG
CAGAAACCTGCAGAACCGGCCGAAGGCGAAGAGCCTGCCAAGACGCAAGCCGATGCGATTGATCTGTCATCGCTTGAAAA
AGACGGGCTGAAAGCAGCCCTGAAAAGCCTCGGCATCGACCTGCGGGTGTTTCTGCGCAGGGCTGAACTCCTTATCATCA
ACGGGCTGAATCCCGATCCCGGCATCCGCTGGGCAGAAGCTCTGCTGGAGAATCATAAAGCCACCCTTGAAAAAGGGCTC
GCACTGCTCAAGGTGCTTTCTCCGGCGGAAAATATCATTCTGGCCGCACACGATGCGGGCATCAGCCTTGCCGGCGCATC
CACCAGAGCGGTGGCCCCCGTTTACCCCAACAGTGTCGAAAGACTGCTTGCCGCTGCCGTGACCGGCAGTGAACAGGCCA
AAGGCGTCAATGTGATAGGTCTGCACGAACTGTACAGACTGGGCTGTGCCGCCGAGACCGGACTGCCCGTCACGCAGACC
GTGATGACCGTGCAGGACAAAAACTACCTGGTCAAAGTGGGCACCACCGTGCAGGCTTTGCTGGACCATGCCGGTATCAG
CGTGGGCGAAGGTGACAGGGTTGTGCTGGGCGGTCCCTTGCGGGGCAGAAGCCTGAGCCGGCTGGACATAGGCATAGGCA
AAGATGACACCGCGCTTTTTGTGGTGCCTGCCGGCACATATCCGCCTGTCAGCGACACCGCCTGCATCAACTGCGGCGAA
TGTATTCTGCGCTGTCCTGCGCGTATACGGCCCAACCTGCTGGGACGCTACAGCGAATTCCGCATGTACGACAAGTGCAA
GGACGAATACATCGATTCCTGCGTGGAATGCGGACTGTGCAGTTACTGGTGCGTGGCCAGACGCCCTGTGCTCCAGCTTA
TCCAGCTGGCAAAACATCAGATCGTGCTTCAGGAGCAGCAGGTGACCGCCTGTTCCCTGCAGGGCGAGACCAAGTAG

Upstream 100 bases:

>100_bases
TGGGCGCTTTCCACGGTCAGTGCATGGGATGTCACGAAGAGGTCCAAAGCGGCCCCTTTGAAAAGAGTCAATGCAACCAG
TGCCATTTCCGGTGATGTCT

Downstream 100 bases:

>100_bases
ACAGGGGGTAACAGCAAATGGCAAACGAATCATTGGCCAAAGCCCCGTTTCTCGCCGTCGGGGCGGCTCCGCACTGGCAT
TGCGGGCGCACCATACACGG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSTTPFALICGDRSAFINGPEPAEVRIPLSGHGQKAVKKKAQVHTGMLVADHPGDKRGEAHSSICGVVAEVTPECVVITA
QKPAEPAEGEEPAKTQADAIDLSSLEKDGLKAALKSLGIDLRVFLRRAELLIINGLNPDPGIRWAEALLENHKATLEKGL
ALLKVLSPAENIILAAHDAGISLAGASTRAVAPVYPNSVERLLAAAVTGSEQAKGVNVIGLHELYRLGCAAETGLPVTQT
VMTVQDKNYLVKVGTTVQALLDHAGISVGEGDRVVLGGPLRGRSLSRLDIGIGKDDTALFVVPAGTYPPVSDTACINCGE
CILRCPARIRPNLLGRYSEFRMYDKCKDEYIDSCVECGLCSYWCVARRPVLQLIQLAKHQIVLQEQQVTACSLQGETK

Sequences:

>Translated_398_residues
MSTTPFALICGDRSAFINGPEPAEVRIPLSGHGQKAVKKKAQVHTGMLVADHPGDKRGEAHSSICGVVAEVTPECVVITA
QKPAEPAEGEEPAKTQADAIDLSSLEKDGLKAALKSLGIDLRVFLRRAELLIINGLNPDPGIRWAEALLENHKATLEKGL
ALLKVLSPAENIILAAHDAGISLAGASTRAVAPVYPNSVERLLAAAVTGSEQAKGVNVIGLHELYRLGCAAETGLPVTQT
VMTVQDKNYLVKVGTTVQALLDHAGISVGEGDRVVLGGPLRGRSLSRLDIGIGKDDTALFVVPAGTYPPVSDTACINCGE
CILRCPARIRPNLLGRYSEFRMYDKCKDEYIDSCVECGLCSYWCVARRPVLQLIQLAKHQIVLQEQQVTACSLQGETK
>Mature_397_residues
STTPFALICGDRSAFINGPEPAEVRIPLSGHGQKAVKKKAQVHTGMLVADHPGDKRGEAHSSICGVVAEVTPECVVITAQ
KPAEPAEGEEPAKTQADAIDLSSLEKDGLKAALKSLGIDLRVFLRRAELLIINGLNPDPGIRWAEALLENHKATLEKGLA
LLKVLSPAENIILAAHDAGISLAGASTRAVAPVYPNSVERLLAAAVTGSEQAKGVNVIGLHELYRLGCAAETGLPVTQTV
MTVQDKNYLVKVGTTVQALLDHAGISVGEGDRVVLGGPLRGRSLSRLDIGIGKDDTALFVVPAGTYPPVSDTACINCGEC
ILRCPARIRPNLLGRYSEFRMYDKCKDEYIDSCVECGLCSYWCVARRPVLQLIQLAKHQIVLQEQQVTACSLQGETK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=310, Percent_Identity=28.0645161290323, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 42390; Mature: 42259

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTPFALICGDRSAFINGPEPAEVRIPLSGHGQKAVKKKAQVHTGMLVADHPGDKRGEA
CCCCCEEEEECCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCCCCH
HSSICGVVAEVTPECVVITAQKPAEPAEGEEPAKTQADAIDLSSLEKDGLKAALKSLGID
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LRVFLRRAELLIINGLNPDPGIRWAEALLENHKATLEKGLALLKVLSPAENIILAAHDAG
HHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
ISLAGASTRAVAPVYPNSVERLLAAAVTGSEQAKGVNVIGLHELYRLGCAAETGLPVTQT
EEEECCCCCEECCCCCHHHHHHHHHHHCCCHHHCCCEEEEHHHHHHHCCCCCCCCCHHHE
VMTVQDKNYLVKVGTTVQALLDHAGISVGEGDRVVLGGPLRGRSLSRLDIGIGKDDTALF
EEEEECCCEEEEECCHHHHHHHHCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCEEE
VVPAGTYPPVSDTACINCGECILRCPARIRPNLLGRYSEFRMYDKCKDEYIDSCVECGLC
EEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
SYWCVARRPVLQLIQLAKHQIVLQEQQVTACSLQGETK
HHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCC
>Mature Secondary Structure 
STTPFALICGDRSAFINGPEPAEVRIPLSGHGQKAVKKKAQVHTGMLVADHPGDKRGEA
CCCCEEEEECCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCCCCH
HSSICGVVAEVTPECVVITAQKPAEPAEGEEPAKTQADAIDLSSLEKDGLKAALKSLGID
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
LRVFLRRAELLIINGLNPDPGIRWAEALLENHKATLEKGLALLKVLSPAENIILAAHDAG
HHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
ISLAGASTRAVAPVYPNSVERLLAAAVTGSEQAKGVNVIGLHELYRLGCAAETGLPVTQT
EEEECCCCCEECCCCCHHHHHHHHHHHCCCHHHCCCEEEEHHHHHHHCCCCCCCCCHHHE
VMTVQDKNYLVKVGTTVQALLDHAGISVGEGDRVVLGGPLRGRSLSRLDIGIGKDDTALF
EEEEECCCEEEEECCHHHHHHHHCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCEEE
VVPAGTYPPVSDTACINCGECILRCPARIRPNLLGRYSEFRMYDKCKDEYIDSCVECGLC
EEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
SYWCVARRPVLQLIQLAKHQIVLQEQQVTACSLQGETK
HHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA