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The map label for this gene is ydcN [C]

Identifier: 78355603

GI number: 78355603

Start: 578103

End: 578672

Strand: Direct

Name: ydcN [C]

Synonym: Dde_0556

Alternate gene names: 78355603

Gene position: 578103-578672 (Clockwise)

Preceding gene: 78355601

Following gene: 78355604

Centisome position: 15.5

GC content: 56.32

Gene sequence:

>570_bases
ATGGCCGCAAAAAAACTGGGAGCGCGCATCTGTAAGTTCCGCGAGGAGCGGGGGATGACGCGTGAAGAACTGGCAGAGGC
CGCCGGCCTCGGAGCCGACTTTATCACGGCGCTGGAAGAAGAGGATCTTTATCCTTCCATCGGCCCGCTGCAGAAGATTG
CCCGCGCCCTTAACGTGCGTCTGGGCACGTTTATGGATGATGAAGTGACCCGCGACCCCATTGTGGTGCGCAAAAGCGGG
CGTGAAAGCGACCTGACCATGCAGAAGGCACGGAACAAACGCGCCGCGTTCATGTTTCATTCGCTGGGCAAGGGAAAAAG
CGACCGCAACATGGAACCTTTTTTCATTGAGATAGCTCCGGAACCCAACGAAGACAGGCAGCTCTCTTCGCATCAGGGCG
AGGAGTTCATTGTTGTCGTTTCGGGCAGCATTCTTGTGCGCTACGGCAATGAAGAGCATGTTCTGGAACAGGGCGACAGC
ATTTACTACAACTCTATCGTGCCGCACTATGTGGGCGCGGCGGGTGACGACAAGGCGGAAATATACGCCGTTATCTATTA
CCCGCGCTAG

Upstream 100 bases:

>100_bases
CCGGACGGCATCATTTCCTTGAATTACCGTCAACTCTTGTATAGTTCTGAACGGTGAATCCTTCAGGGATGCAAATGGTC
TGAAACAGGAGCAGAAAAAC

Downstream 100 bases:

>100_bases
AAAGCAGGTTATTGACGCATGGAAAATTTTGAGCTTCGCGAATGGACTCTCGGTCAGATTCTGGATCATGCCGTGGCCAA
CTGGCCCGACAATGAAGCCG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Phosphate Butyryltransferase; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Transcriptional Regulator-Like Protein; Transcription Regulator; XRE Family-Like Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MAAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVRLGTFMDDEVTRDPIVVRKSG
RESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEIAPEPNEDRQLSSHQGEEFIVVVSGSILVRYGNEEHVLEQGDS
IYYNSIVPHYVGAAGDDKAEIYAVIYYPR

Sequences:

>Translated_189_residues
MAAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVRLGTFMDDEVTRDPIVVRKSG
RESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEIAPEPNEDRQLSSHQGEEFIVVVSGSILVRYGNEEHVLEQGDS
IYYNSIVPHYVGAAGDDKAEIYAVIYYPR
>Mature_188_residues
AAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVRLGTFMDDEVTRDPIVVRKSGR
ESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEIAPEPNEDRQLSSHQGEEFIVVVSGSILVRYGNEEHVLEQGDSI
YYNSIVPHYVGAAGDDKAEIYAVIYYPR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21245; Mature: 21114

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LGTFMDDEVTRDPIVVRKSGRESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEIAP
HCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEECC
EPNEDRQLSSHQGEEFIVVVSGSILVRYGNEEHVLEQGDSIYYNSIVPHYVGAAGDDKAE
CCCCCCCHHHCCCCEEEEEEECEEEEEECCCHHHHHCCCCEEECCCCHHHCCCCCCCCEE
IYAVIYYPR
EEEEEEECC
>Mature Secondary Structure 
AAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVR
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LGTFMDDEVTRDPIVVRKSGRESDLTMQKARNKRAAFMFHSLGKGKSDRNMEPFFIEIAP
HCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEECC
EPNEDRQLSSHQGEEFIVVVSGSILVRYGNEEHVLEQGDSIYYNSIVPHYVGAAGDDKAE
CCCCCCCHHHCCCCEEEEEEECEEEEEECCCHHHHHCCCCEEECCCCHHHCCCCCCCCEE
IYAVIYYPR
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA