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The map label for this gene is yhdW [H]

Identifier: 78355482

GI number: 78355482

Start: 441420

End: 442289

Strand: Direct

Name: yhdW [H]

Synonym: Dde_0435

Alternate gene names: 78355482

Gene position: 441420-442289 (Clockwise)

Preceding gene: 78355478

Following gene: 78355483

Centisome position: 11.83

GC content: 63.45

Gene sequence:

>870_bases
ATGTTTTATGAACTGATTCCCGCGCACGCTGTGTGCGCACATCGCGGCGCACGTTCTCTTGCGCCGGAAAATACCATGCT
GGCCGCACATAAGGCTCTTGCATGCGGCGCGCACTGCTGGGAACTGGATGTGCAGCGTTCGCGCGACGGTGTGCCGGTGG
TCTTTCACGACCACGACCTGTCGCGCACCACCGATGCGGCGCGGTTGTTTTCGCACGGCGGTTCTGCCCCGGTGCTGCAA
ACGGCGCTGCATGATTTTGCGCAGCTGCGCAGTCTTGACGCGGGCAGCTGGTTCGGCCGCAAGGATCCTTTCGGTACGGT
GGCGTCGGGCGAAGTGACCCGCGGAGCGCTGGCAGCCATGGAAGGACAGCCCGTGCCCTCGCTGGCGGAAGCACTGCGCT
TCACCCGTGAACATAGTTTTCCCGTCAACATAGAGATAAAGGAACAGGTACATTCCCCGGGTGACATGCGCATCATCACA
GAGGTGCTTGACATCATACAGGCCGAAGACTGCGCCGGACTGGTGCTGCTGTCTTCGTTCAGCCATGAGTATCTGCGCGA
AGTCCGCCGTCAGTGGCCCGAGGTGCCTCTGGCGCTGCTGAGCGAAGGCGCAACGCCAGAAGAAACCCACCCGGCGGACG
GCACTGCCAGCGGCATAGCCGGATACCTGCGGGGAATAGGGGCGCAGTCGTACCATCCCGACCATACGGTAACCGATGCC
GGGCTGGTGCGCGAGCTGGCGGCGCTGGGCATAACCGTCAATGTGTGGACGGTGAATGACGCCGCCGCAGCCCGCGGTTT
TCATGATGCCGGAGCGCGCTGCATCATCACGGACATGCCCCAGCGGCTGGTGCCGGACGGGCGGGGTTAG

Upstream 100 bases:

>100_bases
GTTACAAAGAATCACCGGCGGGCTGCGCTGCCGCAAACCGGCCGGTTGTCGGCTGTTGCGCGGCGTACTGCCATGCCGGA
AATCAGGCCAGAGGGTGACC

Downstream 100 bases:

>100_bases
CGGTACTGCAGAACAGAGAGTGCTCAGTCCGCGCGGTTTTCCGCGCGGACTGTTTTTTTCTGCATCGTTGTGTATGCTGA
AGGGCACAGGCGCAGGCACA

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MFYELIPAHAVCAHRGARSLAPENTMLAAHKALACGAHCWELDVQRSRDGVPVVFHDHDLSRTTDAARLFSHGGSAPVLQ
TALHDFAQLRSLDAGSWFGRKDPFGTVASGEVTRGALAAMEGQPVPSLAEALRFTREHSFPVNIEIKEQVHSPGDMRIIT
EVLDIIQAEDCAGLVLLSSFSHEYLREVRRQWPEVPLALLSEGATPEETHPADGTASGIAGYLRGIGAQSYHPDHTVTDA
GLVRELAALGITVNVWTVNDAAAARGFHDAGARCIITDMPQRLVPDGRG

Sequences:

>Translated_289_residues
MFYELIPAHAVCAHRGARSLAPENTMLAAHKALACGAHCWELDVQRSRDGVPVVFHDHDLSRTTDAARLFSHGGSAPVLQ
TALHDFAQLRSLDAGSWFGRKDPFGTVASGEVTRGALAAMEGQPVPSLAEALRFTREHSFPVNIEIKEQVHSPGDMRIIT
EVLDIIQAEDCAGLVLLSSFSHEYLREVRRQWPEVPLALLSEGATPEETHPADGTASGIAGYLRGIGAQSYHPDHTVTDA
GLVRELAALGITVNVWTVNDAAAARGFHDAGARCIITDMPQRLVPDGRG
>Mature_289_residues
MFYELIPAHAVCAHRGARSLAPENTMLAAHKALACGAHCWELDVQRSRDGVPVVFHDHDLSRTTDAARLFSHGGSAPVLQ
TALHDFAQLRSLDAGSWFGRKDPFGTVASGEVTRGALAAMEGQPVPSLAEALRFTREHSFPVNIEIKEQVHSPGDMRIIT
EVLDIIQAEDCAGLVLLSSFSHEYLREVRRQWPEVPLALLSEGATPEETHPADGTASGIAGYLRGIGAQSYHPDHTVTDA
GLVRELAALGITVNVWTVNDAAAARGFHDAGARCIITDMPQRLVPDGRG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI284055245, Length=101, Percent_Identity=42.5742574257426, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI284055240, Length=101, Percent_Identity=42.5742574257426, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI284055242, Length=177, Percent_Identity=32.7683615819209, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI21361649, Length=101, Percent_Identity=42.5742574257426, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI189571657, Length=277, Percent_Identity=28.158844765343, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI33457301, Length=187, Percent_Identity=28.3422459893048, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1789858, Length=274, Percent_Identity=27.7372262773723, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 31131; Mature: 31131

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYELIPAHAVCAHRGARSLAPENTMLAAHKALACGAHCWELDVQRSRDGVPVVFHDHDL
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEEHHCCCCCCEEEEECCCC
SRTTDAARLFSHGGSAPVLQTALHDFAQLRSLDAGSWFGRKDPFGTVASGEVTRGALAAM
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
EGQPVPSLAEALRFTREHSFPVNIEIKEQVHSPGDMRIITEVLDIIQAEDCAGLVLLSSF
CCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHC
SHEYLREVRRQWPEVPLALLSEGATPEETHPADGTASGIAGYLRGIGAQSYHPDHTVTDA
CHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
GLVRELAALGITVNVWTVNDAAAARGFHDAGARCIITDMPQRLVPDGRG
HHHHHHHHCCCEEEEEECCHHHHHCCCHHCCCEEEEECCCHHHCCCCCC
>Mature Secondary Structure
MFYELIPAHAVCAHRGARSLAPENTMLAAHKALACGAHCWELDVQRSRDGVPVVFHDHDL
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEEHHCCCCCCEEEEECCCC
SRTTDAARLFSHGGSAPVLQTALHDFAQLRSLDAGSWFGRKDPFGTVASGEVTRGALAAM
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
EGQPVPSLAEALRFTREHSFPVNIEIKEQVHSPGDMRIITEVLDIIQAEDCAGLVLLSSF
CCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHC
SHEYLREVRRQWPEVPLALLSEGATPEETHPADGTASGIAGYLRGIGAQSYHPDHTVTDA
CHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
GLVRELAALGITVNVWTVNDAAAARGFHDAGARCIITDMPQRLVPDGRG
HHHHHHHHCCCEEEEEECCHHHHHCCCHHCCCEEEEECCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]