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The map label for this gene is fliR [H]

Identifier: 78355425

GI number: 78355425

Start: 373171

End: 373956

Strand: Direct

Name: fliR [H]

Synonym: Dde_0378

Alternate gene names: 78355425

Gene position: 373171-373956 (Clockwise)

Preceding gene: 78355419

Following gene: 78355426

Centisome position: 10.0

GC content: 56.49

Gene sequence:

>786_bases
ATGGATCTCTTCAATTTTGATGAAGCCTCTTTCCTCAGCTTTCTGCTTACCCTCATGCGCATCAGCCTTGTGGTTTTTCT
GCTGCCGGTATTCGGGGGCAATTCGGCACCCCGGCTGGTAAAAGGTGCGCTGTGCATGGTGCTTACGCTGGCGCTGTGGC
CGCATCTTTCCTTTTCCGGAAGCCTGTTGCCGGGGCATCCGTTCGGCATTGCGCTTATGCTTGCGGGTGAAATCATCATG
GGCATCATGCTGGGGCTGCTGGTGCGTTTTTTCTTTGCGGGTATCCAGACCGGCGGCGAACTGCTCGGGTTTCAGATGGG
GTTTACCATGGTCAGTGTGGCAGACCCTCTTTCGGGGCAGAGCACCAGCATCAGTTCACATTTCATGTATATGGTCAGTC
TGCTTATTTTTCTGGTGCTTGACGGGCATCTGGTGATGCTCAAAGGCCTTACGGACAGCTTTGCGCTGGTGCCGCCCGGT
CAGCTGGTTTTCAGACACGCCTCGCTGCACAACATGCTGACGTTGGCGGGGGGCATGTTTGTCATGGCCGTGCATATTGC
CGCGCCGGTCATGGCTGCGTTGTTTCTGGTGGAACTGGCGCTGGCACTCATGGGGCGCGCGGCACCGCAGATGAACCTGC
TGATGATCGGGTTTCCGCTGAAGATCGGAGTGGGGTTTCTGTTCATGGGGCTGCTGTTCACGATCATGCGGCATCAGGTT
CAGGATTTCATTCTGGGGCTGGGCCCGCAGATGACCAACATGCTCAAACTGATCAGCCCGCTGTAG

Upstream 100 bases:

>100_bases
CCGCCTTTGCCAAAAGGCCGTACGCGGCATTTACCGGCCTTGCGCGGGCTTTTGCGTCCGGCTGCGGTGCGATGGTCTGT
TTTTTGCTTTTTGAGACGGC

Downstream 100 bases:

>100_bases
GAGCCGGACACCATGCCGCAGCAAGACCCGAGCAGAACAGAACAAGCCACCCCGAAACGCAGGCGTAAAGCGCGGGGTGA
AGGTAATGTGCCCAAATCGC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MDLFNFDEASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSLLPGHPFGIALMLAGEIIM
GIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQSTSISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPG
QLVFRHASLHNMLTLAGGMFVMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQV
QDFILGLGPQMTNMLKLISPL

Sequences:

>Translated_261_residues
MDLFNFDEASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSLLPGHPFGIALMLAGEIIM
GIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQSTSISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPG
QLVFRHASLHNMLTLAGGMFVMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQV
QDFILGLGPQMTNMLKLISPL
>Mature_261_residues
MDLFNFDEASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSLLPGHPFGIALMLAGEIIM
GIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQSTSISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPG
QLVFRHASLHNMLTLAGGMFVMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQV
QDFILGLGPQMTNMLKLISPL

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=221, Percent_Identity=33.4841628959276, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28206; Mature: 28206

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
8.4 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
8.4 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFNFDEASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SLLPGHPFGIALMLAGEIIMGIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
STSISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPGQLVFRHASLHNMLTLAGGMF
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHH
VMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
QDFILGLGPQMTNMLKLISPL
HHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MDLFNFDEASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SLLPGHPFGIALMLAGEIIMGIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
STSISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPGQLVFRHASLHNMLTLAGGMF
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHH
VMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
QDFILGLGPQMTNMLKLISPL
HHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]