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The map label for this gene is yqgF [C]

Identifier: 78355361

GI number: 78355361

Start: 304793

End: 305227

Strand: Direct

Name: yqgF [C]

Synonym: Dde_0314

Alternate gene names: 78355361

Gene position: 304793-305227 (Clockwise)

Preceding gene: 78355360

Following gene: 78355362

Centisome position: 8.17

GC content: 57.24

Gene sequence:

>435_bases
ATGAAATATCTGGGTATTGATTACGGGACACGGCGTACCGGCATAGCTGTTACAGACGGCGCCGGCATGATGGCCTTTCC
GCGGCGGACTATTGTAATGAGCACTCGTGATGCTTTTTTTGCAGAGCTGCTGTCCGTGGTGGAGGAAGAGCGTCCGGCTG
GTGTGGTGGTGGGGTTGCCGCTGCTTGCCGGCGGTGAAGAAACGCTGATCACCCGTCAGGTGCGGAATTTTGTGGCACGG
TTGCGCAGAAGAAGCAGCCTGCCTGTCTATCTGGTGGCGGAAGAACTCAGTTCGTTCGAGGCGGGTGAAGACCTGCGCGA
GGCGGGGTTATCATTCCGCGAGCGTGAAGCCGTGGTGGATCAGCAGGCCGCAGTGCGTATTCTTGAATCGTTTCTGAACC
TGCCGGAAGACCGGCGTATACCTTTGGAAGGATAA

Upstream 100 bases:

>100_bases
CCGGGCTTCTGTGGACGACAGTGCTGCAACCCGTTATACACATCGCACAATCAGCCATCATTTTTTGGGCGCGCGGCCTT
ATCCGCGCAGGGCGTATTGC

Downstream 100 bases:

>100_bases
TGAACGAGAACCCGCAGCAGGAACCGGCAGAACGGCATCCGGCGGCATCTTCCGCAGATGGTGCGCCGGAGCAGGACAAC
TCGGATGCGGCTCGCGGCGG

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAGGEETLITRQVRNFVAR
LRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQAAVRILESFLNLPEDRRIPLEG

Sequences:

>Translated_144_residues
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAGGEETLITRQVRNFVAR
LRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQAAVRILESFLNLPEDRRIPLEG
>Mature_144_residues
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAGGEETLITRQVRNFVAR
LRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQAAVRILESFLNLPEDRRIPLEG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_DESDG (Q316N1)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_386810.1
- ProteinModelPortal:   Q316N1
- SMR:   Q316N1
- STRING:   Q316N1
- GeneID:   3756402
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_0314
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   KYLGIDY
- ProtClustDB:   CLSK706155
- BioCyc:   DDES207559:DDE_0314-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16029; Mature: 16029

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLP
CCEECCCCCCCCCCEEEECCCCCEECCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECC
LLAGGEETLITRQVRNFVARLRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVD
EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHHHHCCCHHHHHHHHH
QQAAVRILESFLNLPEDRRIPLEG
HHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLP
CCEECCCCCCCCCCEEEECCCCCEECCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECC
LLAGGEETLITRQVRNFVARLRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVD
EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHHHHCCCHHHHHHHHH
QQAAVRILESFLNLPEDRRIPLEG
HHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA