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The map label for this gene is rpoZ

Identifier: 78355294

GI number: 78355294

Start: 231033

End: 231254

Strand: Direct

Name: rpoZ

Synonym: Dde_0247

Alternate gene names: 78355294

Gene position: 231033-231254 (Clockwise)

Preceding gene: 78355293

Following gene: 78355295

Centisome position: 6.19

GC content: 56.31

Gene sequence:

>222_bases
ATGGCACGCATTACCGTAGAAGATTGCATGGAGCGCGTAAGCAACCGCTTTCTGCTTGTACAGATGGCTATCAAGCGCGT
GAAGCAGTTCCGCGAGGGATACGAGCCTCTGGTTCCCTCTAAAAACAAGGAAATCGTGACCGCCCTGCGCGAAATCGCAG
CCGCCAAGGTTGTGCCTGAAGACGAGCTGTCCGCCGCCGCGGCGGAAAACAGAGCCGAATAA

Upstream 100 bases:

>100_bases
GACAGAGCCTCCGTCCGCACCGTCCTCTGCCGCCGCCAATGCCACAGAACAGGCAAACGGGCAGTGACCGCCCGCATTCA
ATATCGTCAAGGAGTCTAAC

Downstream 100 bases:

>100_bases
AGCATCATGAGCCAGCGTGACTATTACGAGGTGCTCGGGGTTTCGCGGGATGCCGCAGACGATGAAATAAAACGTGCCTA
CCGCAAAAAGGCCATGGAAT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALREIAAAKVVPEDELSAAAAENRAE

Sequences:

>Translated_73_residues
MARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALREIAAAKVVPEDELSAAAAENRAE
>Mature_72_residues
ARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALREIAAAKVVPEDELSAAAAENRAE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_DESDG (Q316U8)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_386743.1
- STRING:   Q316U8
- GeneID:   3755068
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_0247
- NMPDR:   fig|207559.3.peg.1037
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   HRSSHEV
- ProtClustDB:   PRK00392
- BioCyc:   DDES207559:DDE_0247-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8232; Mature: 8100

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALREIAAAKVVPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCH
DELSAAAAENRAE
HHHHHHHHCCCCC
>Mature Secondary Structure 
ARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALREIAAAKVVPE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCH
DELSAAAAENRAE
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA