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The map label for this gene is yddH [H]

Identifier: 78355171

GI number: 78355171

Start: 116691

End: 117170

Strand: Direct

Name: yddH [H]

Synonym: Dde_0124

Alternate gene names: 78355171

Gene position: 116691-117170 (Clockwise)

Preceding gene: 78355169

Following gene: 78355173

Centisome position: 3.13

GC content: 65.42

Gene sequence:

>480_bases
TTGCTGTGCGCCGTCATGCTGTTTTTACTTGCCGGCGGATGCGGACACAAGACTGTGCTGCCGCCGGTAGCGGCCGGCGG
CGATTCCGTGCTGCCGGCGCAGGGCCAGCGGCACAGGCTGGCCGTGGTACGCACTGCGCAGGCTCTTGTGGGTGTGCCCT
ACAGATGGGGCGGCAGTTCGCCGCAGCAAGGGTTCGATTGCTCCGGACTGGTCTGGTGGGTTATGCGGCATAACGGCATT
GCGGTGCCGCGCATGACAGACGGGCAGGCGCAGACCGGTACCGCGGTGGCCCCTGCGCAGGCGGCCGCCGGTGACATAGC
GGTTTTCCGTATCGGATACGGCGGGCTGCACACTGCCGTCATAAGCGGCAGCGGCACCATGGTGCACAGCCCGAAGTCGG
GCAGCACCGTGCGTGAAGAAAGCTACCTTTCGCGTTACTGGCTTCCCAGACTTGTCACGGTGCGCCGTATTCTTCCCTGA

Upstream 100 bases:

>100_bases
CGTGCTCCGGGGATACAAGCTGGCTATGCGTCCATCTTACTGGTAATAATACCTCATGTGTAATCTGTCACTGCCATGCC
GTCTCAGGGCTGTCCGTACA

Downstream 100 bases:

>100_bases
CGGTACATGCTGATAAAAAAACGGCCGCGGAATTTTCCGCGGCCGTCAGACGTTCACAGGGTGTGTTATCTGTTCACACC
ATCGACCAGGCTTTTCGCCG

Product: NLP/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MLCAVMLFLLAGGCGHKTVLPPVAAGGDSVLPAQGQRHRLAVVRTAQALVGVPYRWGGSSPQQGFDCSGLVWWVMRHNGI
AVPRMTDGQAQTGTAVAPAQAAAGDIAVFRIGYGGLHTAVISGSGTMVHSPKSGSTVREESYLSRYWLPRLVTVRRILP

Sequences:

>Translated_159_residues
MLCAVMLFLLAGGCGHKTVLPPVAAGGDSVLPAQGQRHRLAVVRTAQALVGVPYRWGGSSPQQGFDCSGLVWWVMRHNGI
AVPRMTDGQAQTGTAVAPAQAAAGDIAVFRIGYGGLHTAVISGSGTMVHSPKSGSTVREESYLSRYWLPRLVTVRRILP
>Mature_159_residues
MLCAVMLFLLAGGCGHKTVLPPVAAGGDSVLPAQGQRHRLAVVRTAQALVGVPYRWGGSSPQQGFDCSGLVWWVMRHNGI
AVPRMTDGQAQTGTAVAPAQAAAGDIAVFRIGYGGLHTAVISGSGTMVHSPKSGSTVREESYLSRYWLPRLVTVRRILP

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=114, Percent_Identity=35.0877192982456, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788001, Length=148, Percent_Identity=33.1081081081081, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=34.9206349206349, Blast_Score=70, Evalue=5e-14,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=37.6146788990826, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 16748; Mature: 16748

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCAVMLFLLAGGCGHKTVLPPVAAGGDSVLPAQGQRHRLAVVRTAQALVGVPYRWGGSS
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
PQQGFDCSGLVWWVMRHNGIAVPRMTDGQAQTGTAVAPAQAAAGDIAVFRIGYGGLHTAV
CCCCCCCCCEEEEEEECCCEECCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEE
ISGSGTMVHSPKSGSTVREESYLSRYWLPRLVTVRRILP
ECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLCAVMLFLLAGGCGHKTVLPPVAAGGDSVLPAQGQRHRLAVVRTAQALVGVPYRWGGSS
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
PQQGFDCSGLVWWVMRHNGIAVPRMTDGQAQTGTAVAPAQAAAGDIAVFRIGYGGLHTAV
CCCCCCCCCEEEEEEECCCEECCCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEE
ISGSGTMVHSPKSGSTVREESYLSRYWLPRLVTVRRILP
ECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]