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The map label for this gene is omp16 [H]

Identifier: 78224724

GI number: 78224724

Start: 3974548

End: 3975129

Strand: Direct

Name: omp16 [H]

Synonym: Gmet_3541

Alternate gene names: 78224724

Gene position: 3974548-3975129 (Clockwise)

Preceding gene: 78224723

Following gene: 78224725

Centisome position: 99.43

GC content: 61.51

Gene sequence:

>582_bases
ATGCGTAAATGCACCTTTGGTCTCGTTGCCCTGCTCTGTTTCGGTCTCGTTGCGGCTGGTTGCGCCAAAAAGGAGATGGT
GAAGCCTGAAGAGGCGGTACCGCCGGTAGCGGCCCCCCAACCCACAACTCCGGCCAAACCCGCTGCTCCGCCGGTGAAGG
AGGAGCCCATTGCGGCCCAGCCCATCCCCGAGGCCCCCGTCAAGACGGAAACCCTCCAACCGGCCACGGCCCTTGACACC
GTCACGGCGACTCTGGATCGGATCTTCTTCGATTTCGACTCCTTCGTCCTCAGTCAGGCCGCCCGGGATATCCTTTCCAA
GAACGCGGAGTACCTCCTCAAGAAGCAGCCCAATGCCCGGGTCCTCATTGAAGGGCACTGCGACGAGCGGGGCTCCGACG
AGTACAACCTGGCCCTGGGGGAAAAGCGGGCCAAGGCGGCCCGTGATTACCTGGTGACCCTCGGCGTCGCCGCCAATCGC
CTTTCCATCATCAGTTACGGTGAGGAGAAGCCCCTTGATCCGGGACATACCGAAGAAGCCTGGGCGAAAAACCGTCGGGC
CGAATTCCTCATTGTCAAATAA

Upstream 100 bases:

>100_bases
AAATGAAGCACCGTTCTCTATAATGAAAACAGAATTTTCGGTGACCGGCCGGTGATCATGTTCCGGCAGGCGATTGTCTA
ACAACAAAAGGAGAAGATGT

Downstream 100 bases:

>100_bases
AACCATCGTCCGGGAAAACGGGAGGGGAGCCGGCAACGGCTCCCTTTCTCTATTGCCGGGCAACAACTACGGAGACGCCG
ATGAACATCGTACGGAATAT

Product: OmpA/MotB

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRKCTFGLVALLCFGLVAAGCAKKEMVKPEEAVPPVAAPQPTTPAKPAAPPVKEEPIAAQPIPEAPVKTETLQPATALDT
VTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNARVLIEGHCDERGSDEYNLALGEKRAKAARDYLVTLGVAANR
LSIISYGEEKPLDPGHTEEAWAKNRRAEFLIVK

Sequences:

>Translated_193_residues
MRKCTFGLVALLCFGLVAAGCAKKEMVKPEEAVPPVAAPQPTTPAKPAAPPVKEEPIAAQPIPEAPVKTETLQPATALDT
VTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNARVLIEGHCDERGSDEYNLALGEKRAKAARDYLVTLGVAANR
LSIISYGEEKPLDPGHTEEAWAKNRRAEFLIVK
>Mature_193_residues
MRKCTFGLVALLCFGLVAAGCAKKEMVKPEEAVPPVAAPQPTTPAKPAAPPVKEEPIAAQPIPEAPVKTETLQPATALDT
VTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNARVLIEGHCDERGSDEYNLALGEKRAKAARDYLVTLGVAANR
LSIISYGEEKPLDPGHTEEAWAKNRRAEFLIVK

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=100, Percent_Identity=46, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20967; Mature: 20967

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKCTFGLVALLCFGLVAAGCAKKEMVKPEEAVPPVAAPQPTTPAKPAAPPVKEEPIAAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIPEAPVKTETLQPATALDTVTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCE
VLIEGHCDERGSDEYNLALGEKRAKAARDYLVTLGVAANRLSIISYGEEKPLDPGHTEEA
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHH
WAKNRRAEFLIVK
HHHCCCCCEEEEC
>Mature Secondary Structure
MRKCTFGLVALLCFGLVAAGCAKKEMVKPEEAVPPVAAPQPTTPAKPAAPPVKEEPIAAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIPEAPVKTETLQPATALDTVTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCE
VLIEGHCDERGSDEYNLALGEKRAKAARDYLVTLGVAANRLSIISYGEEKPLDPGHTEEA
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHH
WAKNRRAEFLIVK
HHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]