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The map label for this gene is ydcN [C]

Identifier: 78224628

GI number: 78224628

Start: 3859560

End: 3860156

Strand: Direct

Name: ydcN [C]

Synonym: Gmet_3438

Alternate gene names: 78224628

Gene position: 3859560-3860156 (Clockwise)

Preceding gene: 78224622

Following gene: 78224634

Centisome position: 96.55

GC content: 61.31

Gene sequence:

>597_bases
GTGACCGTGCCAGACATAAAATCCCAGATCAAGGAACTGCGGCTCGGCGAAAAGGTTCGCAAGCTCCGCCAGGAACAGCG
GCTCACCCTGCAGGAGCTCTCGGAACTCTCCGGCCTCTCCAAGCCGCTCCTGTCCCAGATCGAAAACGATCAGGTCACCC
CCCCCATCGCCACGCTCCTCAAGATCTCAAAGGGGCTCAAGGTCGGGATCCACTACTTCTTCGAGGAAGAGGAAGACCAG
CAGAAGCTGGTGCTGACGCGGGCCTCCCAGCAGACAGCCACCCGGCGCCGTACCGGGAACGACGCTCCCCACGGCTACGT
CTACCGCTCCCTCGCCCCCGGCATCCGCCACAAGCCCATGGAGCCGTTCCTCGTGGAATTCGAGCTGACAGAGTGGGACG
ACGCCTTCTTCTACCGCCACGACGGCTTCGAGTTCATCTATCTTCTGGAAGGGGAGCTGGAATTCCACTACGGCACCGAC
ATCATGCGCCTCAACCCGGGTGACAGCATCTACTACGATTCCTCCGAGCCCCACGGCTATGTGTCGGTGGGAGAGCAGAA
GGCAACAGCGGTGGCCGTCCTCTACTCGAAGGATTAG

Upstream 100 bases:

>100_bases
GTCAACGTCCTTTCGGCTGTCAAACTCACTCGGATTCCCATCATATATAAGCTCTTGACGCTGCCCATTCGATTGCCCTA
TAACGGGCGGGAGAGAGGAG

Downstream 100 bases:

>100_bases
AGCTTGCGCTTTTTCAGCTCCGCCATAAAGGAGCGGAGCACCCCCCTCTTCTCGGCGTCGAGATCGCTGAACGCGAGCCC
CATCCCCCCCTCCGGTTCCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator MerR Family; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator-Like Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; HTH_3family Transcriptional Regulator; Phosphotransbutyrylase

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQ
QKLVLTRASQQTATRRRTGNDAPHGYVYRSLAPGIRHKPMEPFLVEFELTEWDDAFFYRHDGFEFIYLLEGELEFHYGTD
IMRLNPGDSIYYDSSEPHGYVSVGEQKATAVAVLYSKD

Sequences:

>Translated_198_residues
MTVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQ
QKLVLTRASQQTATRRRTGNDAPHGYVYRSLAPGIRHKPMEPFLVEFELTEWDDAFFYRHDGFEFIYLLEGELEFHYGTD
IMRLNPGDSIYYDSSEPHGYVSVGEQKATAVAVLYSKD
>Mature_197_residues
TVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFFEEEEDQQ
KLVLTRASQQTATRRRTGNDAPHGYVYRSLAPGIRHKPMEPFLVEFELTEWDDAFFYRHDGFEFIYLLEGELEFHYGTDI
MRLNPGDSIYYDSSEPHGYVSVGEQKATAVAVLYSKD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22811; Mature: 22680

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
KISKGLKVGIHYFFEEEEDQQKLVLTRASQQTATRRRTGNDAPHGYVYRSLAPGIRHKPM
HHHCCCEEEEEEEECCCCCCHHEEEEHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCCC
EPFLVEFELTEWDDAFFYRHDGFEFIYLLEGELEFHYGTDIMRLNPGDSIYYDSSEPHGY
CCEEEEEEECCCCCEEEEEECCCEEEEEEECEEEEEECCEEEEECCCCCEEECCCCCCCE
VSVGEQKATAVAVLYSKD
EEECCCCCEEEEEEEECC
>Mature Secondary Structure 
TVPDIKSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLL
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
KISKGLKVGIHYFFEEEEDQQKLVLTRASQQTATRRRTGNDAPHGYVYRSLAPGIRHKPM
HHHCCCEEEEEEEECCCCCCHHEEEEHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCCC
EPFLVEFELTEWDDAFFYRHDGFEFIYLLEGELEFHYGTDIMRLNPGDSIYYDSSEPHGY
CCEEEEEEECCCCCEEEEEECCCEEEEEEECEEEEEECCEEEEECCCCCEEECCCCCCCE
VSVGEQKATAVAVLYSKD
EEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA