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The map label for this gene is ihfA [H]

Identifier: 78224249

GI number: 78224249

Start: 3450825

End: 3451037

Strand: Reverse

Name: ihfA [H]

Synonym: Gmet_3056

Alternate gene names: 78224249

Gene position: 3451037-3450825 (Counterclockwise)

Preceding gene: 78224251

Following gene: 78224248

Centisome position: 86.33

GC content: 56.81

Gene sequence:

>213_bases
ATGGTCGAAGTGCTCCTTGAGCAAATCAAGAAGACCCTTGAGCGGGAAGACAGGATAAAGATCACCGGTTTTGGCAACTT
CGAAGTAAAAAGGAAAGCGGACCGGCGGGGGCGCAATCCCCAGACCGGCGAGGCGCTCACCATCCAGTCCCGGCGAGTGC
TGACATTCAAGCCCAGTGCGGTCCTCAAGAACTCCATCAACGGGGAGTCCTGA

Upstream 100 bases:

>100_bases
AAACGATAAGCAATGGGAGGAAGCGTAACCCCATGACAAAAGAAGAGATTGCAGAACTGGTGAGCACCAAGGGAGCTATT
CAAGGAGAGAAGCGGACGAG

Downstream 100 bases:

>100_bases
TGGGGAAGTTTACCGCCGTCATCCTCGACTTCGAGACAACTGGCCTCTCACCTGGCTATGGCGACCGGGCCATCGAGATC
GGTGCGGTACTGGTCCGGAA

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSAVLKNSINGES

Sequences:

>Translated_70_residues
MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSAVLKNSINGES
>Mature_70_residues
MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSAVLKNSINGES

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=70, Percent_Identity=44.2857142857143, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1786644, Length=66, Percent_Identity=36.3636363636364, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 7999; Mature: 7999

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA
CHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHCCCCCCCCCEEEECCCEEEEECCHH
VLKNSINGES
HHHCCCCCCC
>Mature Secondary Structure
MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA
CHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHCCCCCCCCCEEEECCCEEEEECCHH
VLKNSINGES
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA