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The map label for this gene is 78224246

Identifier: 78224246

GI number: 78224246

Start: 3449164

End: 3449706

Strand: Reverse

Name: 78224246

Synonym: Gmet_3053

Alternate gene names: NA

Gene position: 3449706-3449164 (Counterclockwise)

Preceding gene: 78224247

Following gene: 78224245

Centisome position: 86.3

GC content: 51.57

Gene sequence:

>543_bases
GTGATGAAACGAATTTGCGGTGTTGTCCTGTTATGGATAATCCTTATTTCTCTGCCGGTATGGGCAAAGGAGCCCTTGCG
GATCATCGAGGGGGAAGTGGTGAAGGTCGTCGATGGCGACACGATCACCATCGATTCCGAGGGAACAAGGGTCAAGGTTC
GACTGTATGGTATCGATGCTCCTGAAACTGAGAAAATCAACAGAAAGACCGGTGTGGTTACAAAGCCAGGACAACCTTTC
GGTGAAGAGGCGTTTCATGCTCTTGCTGACAAGGTTTCGAACAAGTCGGTACGACTTGAGGTGATGGGCATCGACAAGTA
TCGACGATCGGTTTCCTTTGTCTGGTTGGGGGATCGGAATATCAATCGGGAAATGGTTCGAGAGGGATGGTCATGGGCAT
TCCGGAAGTACCTCGACCGTTTCAGTGCATATTTCCTTGATGACGAGGACATCGCCCGCAGTGAGAAACGAGGGATCTGG
CAAGATGCCGATCCTGAACCCCCATGGGAATTCCGGAAACGGACCAAGACAAGCGGGGGCTGA

Upstream 100 bases:

>100_bases
ATTAAAGACCTCCGGGATATGGGGTTTACGCACCTGATCATTTCCGATGGTCACAAGTCGAACTGGAACGTCGATTTGAA
CAATTGAGCTTCGTGGAGCC

Downstream 100 bases:

>100_bases
CCGAGGAGGGTTCGATGAGCATTCAAGTGATTCAGAAGATTCTTGAAGGGAAGAAAATTTTTGATTAGAGAGAACTCGTC
GTTATTACGCGCAAGGGACC

Product: SNase-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MMKRICGVVLLWIILISLPVWAKEPLRIIEGEVVKVVDGDTITIDSEGTRVKVRLYGIDAPETEKINRKTGVVTKPGQPF
GEEAFHALADKVSNKSVRLEVMGIDKYRRSVSFVWLGDRNINREMVREGWSWAFRKYLDRFSAYFLDDEDIARSEKRGIW
QDADPEPPWEFRKRTKTSGG

Sequences:

>Translated_180_residues
MMKRICGVVLLWIILISLPVWAKEPLRIIEGEVVKVVDGDTITIDSEGTRVKVRLYGIDAPETEKINRKTGVVTKPGQPF
GEEAFHALADKVSNKSVRLEVMGIDKYRRSVSFVWLGDRNINREMVREGWSWAFRKYLDRFSAYFLDDEDIARSEKRGIW
QDADPEPPWEFRKRTKTSGG
>Mature_180_residues
MMKRICGVVLLWIILISLPVWAKEPLRIIEGEVVKVVDGDTITIDSEGTRVKVRLYGIDAPETEKINRKTGVVTKPGQPF
GEEAFHALADKVSNKSVRLEVMGIDKYRRSVSFVWLGDRNINREMVREGWSWAFRKYLDRFSAYFLDDEDIARSEKRGIW
QDADPEPPWEFRKRTKTSGG

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321353, Length=136, Percent_Identity=33.0882352941176, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 20774; Mature: 20774

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS01123 TNASE_1 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRICGVVLLWIILISLPVWAKEPLRIIEGEVVKVVDGDTITIDSEGTRVKVRLYGIDA
CHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCEEEECCCCCEEEEEEEECCC
PETEKINRKTGVVTKPGQPFGEEAFHALADKVSNKSVRLEVMGIDKYRRSVSFVWLGDRN
CCCHHCHHCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHHHEEEEEEECCCC
INREMVREGWSWAFRKYLDRFSAYFLDDEDIARSEKRGIWQDADPEPPWEFRKRTKTSGG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MMKRICGVVLLWIILISLPVWAKEPLRIIEGEVVKVVDGDTITIDSEGTRVKVRLYGIDA
CHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCEEEECCCCCEEEEEEEECCC
PETEKINRKTGVVTKPGQPFGEEAFHALADKVSNKSVRLEVMGIDKYRRSVSFVWLGDRN
CCCHHCHHCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHHHEEEEEEECCCC
INREMVREGWSWAFRKYLDRFSAYFLDDEDIARSEKRGIWQDADPEPPWEFRKRTKTSGG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]