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The map label for this gene is yqeN [H]

Identifier: 78223501

GI number: 78223501

Start: 2604542

End: 2605546

Strand: Reverse

Name: yqeN [H]

Synonym: Gmet_2298

Alternate gene names: 78223501

Gene position: 2605546-2604542 (Counterclockwise)

Preceding gene: 78223502

Following gene: 78223499

Centisome position: 65.18

GC content: 58.51

Gene sequence:

>1005_bases
ATGAAAATCGACGAATTCAATAAAGCCTTGGACCGGGGAGAGATTTCTCCCCTTTATTATTTCCATGGGGACGAGCCGCA
CCTCATGGAACGGGCCGTGAAGCGGCTCATGGATAGTGCTGTCCCCCCCGATTTCCGCGATTTCAATCTGGATGTCTTCT
ACGGCAACGAGTGCAAGGGGGACGAGGTTGCCTCGGTTGCCCAGACGCTCCCCATGTTCGCCGATCGACGGATGGTCCTC
GTGAAGCGGGCCGGAGATCTCTCCGCTGCCGCCCTGGAGATTCTCGCCTCCTGTGTCGCCGACCCTCCGCCAACCACCTG
TCTCGTCTTCATGGGGGAGAAGGTGGACCAGCGGAAGAAGTTTTTCCAGGAGATGAAGAAGAAGGGGGAGCTTGTGGAGT
GCAAGCGCCCCTATGAGAATCAGCTTGGCGCCTTCATCCGTGAGGAGGCAAAGGGGCTCGGCAAGCGGGTCGAACCGGCG
GCGGCCGAGATGCTGGTCTATCTGGTGGGGAACAACCTGGGCGAACTCTCCACCCAGTTGGAAAAAGTAGCCCTGTACGT
GGGGCAGCGTGAGACGATCTCTGTGGAGGATGTGCGGGGAATTGTCTCCGACACGAAGGTGGAGAGTGTTTTCGATCTTA
CGAATGCCCTCGGGGAGCGAAACGTGGTAAAGGCGCTCCGAAGCCTGGCCACCATACTCAGGGACGGGGAGGCGCCGCTT
ATGCTTCTAGCCATGATCGCGCGGCACTTTCGGCAGCTCTGGCGAGTGCGTGATCTGATGGCGCAGAAAGTCCCCCAGCA
GGACATTTCCCGCCTTGCCGGGATCAATCCCTACTTCATCAAGGGAGTCATGGCACAGGCGCGGAACTTTTCCGCCTCAG
AATTGAAAAAAGTTTTTGAGGGCCTCTATGCTACCGACCTTGCCTTGAAGGGGGGAGGGGCGAAACGGCCGACCCTGACT
TTGGAAAAGCTTGTGATGGACGTCTGTGGGATGGGCTCCCGGTAG

Upstream 100 bases:

>100_bases
GATTCGGGAGATCTGCCGCAAGATGGCGCGGGAAGTCTATATTCACCTTACGGAAGATTTCTGATGTCCATGGAGTCCCT
GTTCCGACTTCTTCGAGCCC

Downstream 100 bases:

>100_bases
CAAGAGGGAGGAAATTATCTCATGCAGCAAGGCATTTGACCGTGCAGCGTCACAGAAAAAGGGACCCCTGTCGGGAGTCC
CTTTTAGTAGTGCATATAGA

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKIDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNECKGDEVASVAQTLPMFADRRMVL
VKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVDQRKKFFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPA
AAEMLVYLVGNNLGELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILRDGEAPL
MLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFIKGVMAQARNFSASELKKVFEGLYATDLALKGGGAKRPTLT
LEKLVMDVCGMGSR

Sequences:

>Translated_334_residues
MKIDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNECKGDEVASVAQTLPMFADRRMVL
VKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVDQRKKFFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPA
AAEMLVYLVGNNLGELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILRDGEAPL
MLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFIKGVMAQARNFSASELKKVFEGLYATDLALKGGGAKRPTLT
LEKLVMDVCGMGSR
>Mature_334_residues
MKIDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNECKGDEVASVAQTLPMFADRRMVL
VKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVDQRKKFFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPA
AAEMLVYLVGNNLGELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILRDGEAPL
MLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFIKGVMAQARNFSASELKKVFEGLYATDLALKGGGAKRPTLT
LEKLVMDVCGMGSR

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 37270; Mature: 37270

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNECKG
CCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
DEVASVAQTLPMFADRRMVLVKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVDQRKK
HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
FFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPAAAEMLVYLVGNNLGELSTQL
HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
EKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILRDGEAPL
HHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
MLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFIKGVMAQARNFSASELKKVFE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
GLYATDLALKGGGAKRPTLTLEKLVMDVCGMGSR
HHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNECKG
CCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
DEVASVAQTLPMFADRRMVLVKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVDQRKK
HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
FFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPAAAEMLVYLVGNNLGELSTQL
HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
EKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILRDGEAPL
HHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
MLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFIKGVMAQARNFSASELKKVFE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
GLYATDLALKGGGAKRPTLTLEKLVMDVCGMGSR
HHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]