| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is glnD [H]
Identifier: 78222638
GI number: 78222638
Start: 1594680
End: 1597379
Strand: Direct
Name: glnD [H]
Synonym: Gmet_1426
Alternate gene names: 78222638
Gene position: 1594680-1597379 (Clockwise)
Preceding gene: 78222637
Following gene: 78222639
Centisome position: 39.89
GC content: 55.89
Gene sequence:
>2700_bases ATGGAATTCAACATTGACCGCTACTTTCCCGACACCTCTCAGGAGACTGGTGATGCCGGCCGTGCCTCCTTCGAGGAGAA GCGTCCCCTTTACCTGGCTGCGAGCAAGCACTTCCTGAACCACTACCGGGAAGAGATCAGGGAGATGCACAATGCCGGCA CTCAAGGAAGCGTCGTGGTGCGTAACCTGACTGCCATGACCGATACCCTGGTCCGCAAGCTCTTTCGCAGCATAACAAGG GATGTGGCCCAGAGGGGGCGGGTGAGGGAACCATTGACCCTGACTGCCATCGGTGGTTATGGACGGGGAGAGCTCAACCC CTACTCGGACATCGACCTGATGTTTCTCTACGGCGGCAAAGACCAGGCCCGGGTTGAGGATATCGCCCAGAAGCTCCTCT ATTTTCTGTGGGACATGCGGCTTGACGTTGGGTACTCGGTGCGTACCCTGCAGGATTGTGTGGAGATGGCTGCCTCCGAC TTGACGGTGCGGACGGCTCTGCTCGATGCACGCGTCCTTGCCGGAAGCCGATTGCTGTTCAAGGATTTCGAGAAGGTCAT GCTGACCCAGATCCTTTCCAAACGGAGCGACTCCTTCATTAAGGAGAAGGTTGCGGAACTGGGGAAGCGGAGGGAGAAGT ACGGCTCGTCGGTCTATCTCCTCGAGCCCAATGTCAAGGAGAGCGAAGGGGGGCTCCGGGACCTTCACACGGCACTCTGG GTGGCGAAAATCAAGTACAAGATTTCCGATATCCGCGAACTGATCGTCAAGGGGGTCATGACCGAGGAGGAGGTCTCGGT TTACGGCGAGGCGCTTTCCTATCTCTGGCGCATCCGGAACGAACTCCATTTCCATGCCGGCCGCAAGAACGATCAGCTCA CGTTTGATGCCCAGATCAATCTGGCCGGGTTCTTCGGCTACAAGGACGTCGGAAAGTCTTTGGCAGTGGAAGAGTTCATG CGTGACTACTACCTCCATGCAACTCGGGTCGAACATCTTTCTTCCTCTCTCATCACGAAATGTTCACAGCGGGAAGAGAG GGCGCTGAAGATCATCGGCTACTTTGTCCGACGGCATGTGGGTGAGGGTTTTTACATCATCAAGGGTGAGTTGGTGATCC CCGACGAATCGGTGATCCACAAGGAGCCGGCCCGGCTCATGAAAATATTCGAGTATGCCCAGAAGCATGGCGTTGCCATA AGTGTCACGGTGAAGTCGCTGATCCGGAAGAATCTTCACCTCATTAACGACAAGTTCAGGAGAAATAAGGATGTCAACCA GTCATTCTTTGCGATCCTCCGCAGCGAGAAGGGGGCCTCCGAAACTCTGCAACTCATGCATCACCTGGAGTTCCTGAACC GTTTCATCCCCGAGTTCGGCAATATCTACTGCAAGGTTCAGCATGACCTCTACCACATCTACACCGTTGATACCCACTCG CTTTTTGCGGTGGAAGAGATTGAGAAGCTGTTGCGGGGAGACCATGCCGAAGATCTGCCGCTTCTTACCCGGCTTGCCAG GGAGGTGGACAAGAGGGAACTCCTGATCCTTGGGGTACTTTTCCACGATATCGGCAAGGGGGAAGGGGGGGGGCATGCCG ACAAGGGCGCTGACATGATCCCCACCATTGCCCGCCGGATGGGGCTCTGCAAGGAGGATTCGGAACGGCTCGAATTCATG GTGCGGAGCCATCTCCTCATGGCGCACATCGCCCAGCGCCGTGACCTCCATGATGACAAGATGATCATCCAGTTTGCCCG ACAGATGGAGAAGAGTGAGAACCTCAAGATGCTCTACCTTCTCAGTTATGCCGACATACGAGCTGTCGGGACCGATGTCT GGACCGAGTGGAAGGCGATGCTCCTCCAGGAGTTGTACGAGAAGAGCTTCAACGTGCTGGAGCGCGGCGATTTCCGGCTG GAGGCCAGGAGTGAGCGGGTCAAGAAGGTGAAGCGGAACGTACTGGAGCTTCTTGGCGACGAGTACCCAGTGGCTGCAGT GAAAGAAGAGCTGAAGGCGATGACCAACCGGCATCTTCTCTCCAATGCTCCGCAGGTCATCGCCGAGCATGTGAAGCTGC TCCTTGCCCTTGAACACGAAAAAATCATCACCCGTCTCGACCATGAGTCCGACGGGGGATACTCCAATTTCACCATCTGC ACCCTCGATGTACCGGGGCTCTTTTCCATGATTACCGGCGTCATGGCCGCCAACGGGATAAATATCCTCGGTGCCCAGAT TCATACGAGTTCCAATGGCAAGGCGCTGGACATCCTGCAGGTGAATTCACCCCAAGGCTTTATCATAACCGACGTGGGTC GGTGGAAGCGGGTGAATGAGGATCTCCGGCAGGTGCTGACCGGCAAGACCCCGGTGGCCTCGCTCGTTGCAAAGCGGCAG CGGCCGACACTCCTTGCTGAAAAGGCAAAACCCCGTTTTTCCGCGCGAGTCGAAATCGACAACGAGGTGTCATCGGACTA TACAGTCATCGACATCTATACCCATGACAAAGTGGGAATCCTTTACCAGATCACGAGCACCCTGACGGAACTGGGGCTCT ACATCGGTGTCTCCAAGATTTCCACCAAGGTGGACCAGGTGGCCGACGTCTTCTACGTGAAGGACATATTCGGCCACAAG ATCACCAATCCGGAGCGGCTCGAAGAAATACGGGAGAGACTTTTGAAGGCCGTGGAGTGA
Upstream 100 bases:
>100_bases TCGGGACAAGGCCTTTCTTGATCGGGCTGCCGACGGCATTGTGGATGGAATTAAGGGGTATATCCGTACAATCGGCACCG GGCGATAGGTAAGGGATTTT
Downstream 100 bases:
>100_bases GGAGAACGTGAACCAGTACCTCGATCTCTTTCTGAATTACCTTCTTGTGGAGAAGGGGCTGGCGAAAAATTCCCTCGATT CCTACGGCCGCGACATGATC
Product: UTP-GlnB (protein PII) uridylyltransferase, GlnD
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MEFNIDRYFPDTSQETGDAGRASFEEKRPLYLAASKHFLNHYREEIREMHNAGTQGSVVVRNLTAMTDTLVRKLFRSITR DVAQRGRVREPLTLTAIGGYGRGELNPYSDIDLMFLYGGKDQARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMAASD LTVRTALLDARVLAGSRLLFKDFEKVMLTQILSKRSDSFIKEKVAELGKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VAKIKYKISDIRELIVKGVMTEEEVSVYGEALSYLWRIRNELHFHAGRKNDQLTFDAQINLAGFFGYKDVGKSLAVEEFM RDYYLHATRVEHLSSSLITKCSQREERALKIIGYFVRRHVGEGFYIIKGELVIPDESVIHKEPARLMKIFEYAQKHGVAI SVTVKSLIRKNLHLINDKFRRNKDVNQSFFAILRSEKGASETLQLMHHLEFLNRFIPEFGNIYCKVQHDLYHIYTVDTHS LFAVEEIEKLLRGDHAEDLPLLTRLAREVDKRELLILGVLFHDIGKGEGGGHADKGADMIPTIARRMGLCKEDSERLEFM VRSHLLMAHIAQRRDLHDDKMIIQFARQMEKSENLKMLYLLSYADIRAVGTDVWTEWKAMLLQELYEKSFNVLERGDFRL EARSERVKKVKRNVLELLGDEYPVAAVKEELKAMTNRHLLSNAPQVIAEHVKLLLALEHEKIITRLDHESDGGYSNFTIC TLDVPGLFSMITGVMAANGINILGAQIHTSSNGKALDILQVNSPQGFIITDVGRWKRVNEDLRQVLTGKTPVASLVAKRQ RPTLLAEKAKPRFSARVEIDNEVSSDYTVIDIYTHDKVGILYQITSTLTELGLYIGVSKISTKVDQVADVFYVKDIFGHK ITNPERLEEIRERLLKAVE
Sequences:
>Translated_899_residues MEFNIDRYFPDTSQETGDAGRASFEEKRPLYLAASKHFLNHYREEIREMHNAGTQGSVVVRNLTAMTDTLVRKLFRSITR DVAQRGRVREPLTLTAIGGYGRGELNPYSDIDLMFLYGGKDQARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMAASD LTVRTALLDARVLAGSRLLFKDFEKVMLTQILSKRSDSFIKEKVAELGKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VAKIKYKISDIRELIVKGVMTEEEVSVYGEALSYLWRIRNELHFHAGRKNDQLTFDAQINLAGFFGYKDVGKSLAVEEFM RDYYLHATRVEHLSSSLITKCSQREERALKIIGYFVRRHVGEGFYIIKGELVIPDESVIHKEPARLMKIFEYAQKHGVAI SVTVKSLIRKNLHLINDKFRRNKDVNQSFFAILRSEKGASETLQLMHHLEFLNRFIPEFGNIYCKVQHDLYHIYTVDTHS LFAVEEIEKLLRGDHAEDLPLLTRLAREVDKRELLILGVLFHDIGKGEGGGHADKGADMIPTIARRMGLCKEDSERLEFM VRSHLLMAHIAQRRDLHDDKMIIQFARQMEKSENLKMLYLLSYADIRAVGTDVWTEWKAMLLQELYEKSFNVLERGDFRL EARSERVKKVKRNVLELLGDEYPVAAVKEELKAMTNRHLLSNAPQVIAEHVKLLLALEHEKIITRLDHESDGGYSNFTIC TLDVPGLFSMITGVMAANGINILGAQIHTSSNGKALDILQVNSPQGFIITDVGRWKRVNEDLRQVLTGKTPVASLVAKRQ RPTLLAEKAKPRFSARVEIDNEVSSDYTVIDIYTHDKVGILYQITSTLTELGLYIGVSKISTKVDQVADVFYVKDIFGHK ITNPERLEEIRERLLKAVE >Mature_899_residues MEFNIDRYFPDTSQETGDAGRASFEEKRPLYLAASKHFLNHYREEIREMHNAGTQGSVVVRNLTAMTDTLVRKLFRSITR DVAQRGRVREPLTLTAIGGYGRGELNPYSDIDLMFLYGGKDQARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMAASD LTVRTALLDARVLAGSRLLFKDFEKVMLTQILSKRSDSFIKEKVAELGKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VAKIKYKISDIRELIVKGVMTEEEVSVYGEALSYLWRIRNELHFHAGRKNDQLTFDAQINLAGFFGYKDVGKSLAVEEFM RDYYLHATRVEHLSSSLITKCSQREERALKIIGYFVRRHVGEGFYIIKGELVIPDESVIHKEPARLMKIFEYAQKHGVAI SVTVKSLIRKNLHLINDKFRRNKDVNQSFFAILRSEKGASETLQLMHHLEFLNRFIPEFGNIYCKVQHDLYHIYTVDTHS LFAVEEIEKLLRGDHAEDLPLLTRLAREVDKRELLILGVLFHDIGKGEGGGHADKGADMIPTIARRMGLCKEDSERLEFM VRSHLLMAHIAQRRDLHDDKMIIQFARQMEKSENLKMLYLLSYADIRAVGTDVWTEWKAMLLQELYEKSFNVLERGDFRL EARSERVKKVKRNVLELLGDEYPVAAVKEELKAMTNRHLLSNAPQVIAEHVKLLLALEHEKIITRLDHESDGGYSNFTIC TLDVPGLFSMITGVMAANGINILGAQIHTSSNGKALDILQVNSPQGFIITDVGRWKRVNEDLRQVLTGKTPVASLVAKRQ RPTLLAEKAKPRFSARVEIDNEVSSDYTVIDIYTHDKVGILYQITSTLTELGLYIGVSKISTKVDQVADVFYVKDIFGHK ITNPERLEEIRERLLKAVE
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=819, Percent_Identity=31.1355311355311, Blast_Score=368, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 102918; Mature: 102918
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFNIDRYFPDTSQETGDAGRASFEEKRPLYLAASKHFLNHYREEIREMHNAGTQGSVVV CCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHH RNLTAMTDTLVRKLFRSITRDVAQRGRVREPLTLTAIGGYGRGELNPYSDIDLMFLYGGK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC DQARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMAASDLTVRTALLDARVLAGSRLLF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH KDFEKVMLTQILSKRSDSFIKEKVAELGKRREKYGSSVYLLEPNVKESEGGLRDLHTALW HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH VAKIKYKISDIRELIVKGVMTEEEVSVYGEALSYLWRIRNELHFHAGRKNDQLTFDAQIN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE LAGFFGYKDVGKSLAVEEFMRDYYLHATRVEHLSSSLITKCSQREERALKIIGYFVRRHV EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEGFYIIKGELVIPDESVIHKEPARLMKIFEYAQKHGVAISVTVKSLIRKNLHLINDKFR CCCEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH RNKDVNQSFFAILRSEKGASETLQLMHHLEFLNRFIPEFGNIYCKVQHDLYHIYTVDTHS CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEEEEECCCC LFAVEEIEKLLRGDHAEDLPLLTRLAREVDKRELLILGVLFHDIGKGEGGGHADKGADMI HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH PTIARRMGLCKEDSERLEFMVRSHLLMAHIAQRRDLHDDKMIIQFARQMEKSENLKMLYL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE LSYADIRAVGTDVWTEWKAMLLQELYEKSFNVLERGDFRLEARSERVKKVKRNVLELLGD EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCC EYPVAAVKEELKAMTNRHLLSNAPQVIAEHVKLLLALEHEKIITRLDHESDGGYSNFTIC CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE TLDVPGLFSMITGVMAANGINILGAQIHTSSNGKALDILQVNSPQGFIITDVGRWKRVNE EECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEECCHHHHHHHH DLRQVLTGKTPVASLVAKRQRPTLLAEKAKPRFSARVEIDNEVSSDYTVIDIYTHDKVGI HHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCH LYQITSTLTELGLYIGVSKISTKVDQVADVFYVKDIFGHKITNPERLEEIRERLLKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MEFNIDRYFPDTSQETGDAGRASFEEKRPLYLAASKHFLNHYREEIREMHNAGTQGSVVV CCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHH RNLTAMTDTLVRKLFRSITRDVAQRGRVREPLTLTAIGGYGRGELNPYSDIDLMFLYGGK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC DQARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMAASDLTVRTALLDARVLAGSRLLF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH KDFEKVMLTQILSKRSDSFIKEKVAELGKRREKYGSSVYLLEPNVKESEGGLRDLHTALW HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH VAKIKYKISDIRELIVKGVMTEEEVSVYGEALSYLWRIRNELHFHAGRKNDQLTFDAQIN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE LAGFFGYKDVGKSLAVEEFMRDYYLHATRVEHLSSSLITKCSQREERALKIIGYFVRRHV EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEGFYIIKGELVIPDESVIHKEPARLMKIFEYAQKHGVAISVTVKSLIRKNLHLINDKFR CCCEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH RNKDVNQSFFAILRSEKGASETLQLMHHLEFLNRFIPEFGNIYCKVQHDLYHIYTVDTHS CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEEEEECCCC LFAVEEIEKLLRGDHAEDLPLLTRLAREVDKRELLILGVLFHDIGKGEGGGHADKGADMI HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH PTIARRMGLCKEDSERLEFMVRSHLLMAHIAQRRDLHDDKMIIQFARQMEKSENLKMLYL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE LSYADIRAVGTDVWTEWKAMLLQELYEKSFNVLERGDFRLEARSERVKKVKRNVLELLGD EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCC EYPVAAVKEELKAMTNRHLLSNAPQVIAEHVKLLLALEHEKIITRLDHESDGGYSNFTIC CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE TLDVPGLFSMITGVMAANGINILGAQIHTSSNGKALDILQVNSPQGFIITDVGRWKRVNE EECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEECCHHHHHHHH DLRQVLTGKTPVASLVAKRQRPTLLAEKAKPRFSARVEIDNEVSSDYTVIDIYTHDKVGI HHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCH LYQITSTLTELGLYIGVSKISTKVDQVADVFYVKDIFGHKITNPERLEEIRERLLKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA