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The map label for this gene is yohD [H]

Identifier: 78222580

GI number: 78222580

Start: 1531365

End: 1532003

Strand: Direct

Name: yohD [H]

Synonym: Gmet_1368

Alternate gene names: 78222580

Gene position: 1531365-1532003 (Clockwise)

Preceding gene: 78222579

Following gene: 78222581

Centisome position: 38.31

GC content: 55.87

Gene sequence:

>639_bases
ATGCTCGGGGGCTACGTGAACCACCTGCTTGGTGAGTATCTGCAGCAACATGGTTACTGGGTTCTGTTTCTTTGGACCTT
CCTAGAAGGGGAGGCGGGTCTCATCCTGGCCGGGTTCCTGGCCTTCCAGGGGTATCTGACTCTTCCCGCCGTTATCGTGA
CGGCCCTTGGCGGGGCGTTTCTCGGCGATCAGTTTTACTTTTATCTGGGGCGTTGGAAGGGTCCATGGCTTCTCAAGATG
TTCACCCTTGTCGCCCGGAAGTTCCGCAAGGCCCTGCGGCTCATTGAGAAGTACGGTACGTTCGTTGCTTTCATCTCCCG
ATACACCTATGGTTTCCGGATTGTTTTGCCGATCATCCTCGGTATGTCCAGTTTTCCGGCGTCCCGCTTTCTTTCCCTCA
ATATGGTGAGTGCGCTCCTCTGGGCGACGCTGTTTTCGTTGGCCGGTTACTTCTTCGGCAAAAGCGCATCGCTGTTCGTG
GAGGACGTGAGCCGTTACGAGATGCACCTTCTCGCAGCGCTCGCCGGCCTTATTTTCTGTATGTGGCTGTCCCATTTCGT
CCATGCCTGGTTCCGGCGCAAGCCGGCCCGAACGAGGTTGAAGAGGATAAGGGATAGCCGAAAAACCGTGGATCAGTAA

Upstream 100 bases:

>100_bases
GTTGAAGTTGTTGCGTTAACGCAGCACGTGGATCTATTTTCCGAGAAAAGGGCTGCGAGGCCCTTTTCTTGTTTGCGGGA
CAGTGAGCACTGTTCCGTCG

Downstream 100 bases:

>100_bases
CAAAGAGATGTGCTGGAGACCTCGATGACCGTTTCGATGAAGAATAATATTTCAGTCATCCTCGTGGAACCCCAGAGTCC
GGGTAACGTGGGGATGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MLGGYVNHLLGEYLQQHGYWVLFLWTFLEGEAGLILAGFLAFQGYLTLPAVIVTALGGAFLGDQFYFYLGRWKGPWLLKM
FTLVARKFRKALRLIEKYGTFVAFISRYTYGFRIVLPIILGMSSFPASRFLSLNMVSALLWATLFSLAGYFFGKSASLFV
EDVSRYEMHLLAALAGLIFCMWLSHFVHAWFRRKPARTRLKRIRDSRKTVDQ

Sequences:

>Translated_212_residues
MLGGYVNHLLGEYLQQHGYWVLFLWTFLEGEAGLILAGFLAFQGYLTLPAVIVTALGGAFLGDQFYFYLGRWKGPWLLKM
FTLVARKFRKALRLIEKYGTFVAFISRYTYGFRIVLPIILGMSSFPASRFLSLNMVSALLWATLFSLAGYFFGKSASLFV
EDVSRYEMHLLAALAGLIFCMWLSHFVHAWFRRKPARTRLKRIRDSRKTVDQ
>Mature_212_residues
MLGGYVNHLLGEYLQQHGYWVLFLWTFLEGEAGLILAGFLAFQGYLTLPAVIVTALGGAFLGDQFYFYLGRWKGPWLLKM
FTLVARKFRKALRLIEKYGTFVAFISRYTYGFRIVLPIILGMSSFPASRFLSLNMVSALLWATLFSLAGYFFGKSASLFV
EDVSRYEMHLLAALAGLIFCMWLSHFVHAWFRRKPARTRLKRIRDSRKTVDQ

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=160, Percent_Identity=31.875, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1789481, Length=153, Percent_Identity=30.718954248366, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24427; Mature: 24427

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGYVNHLLGEYLQQHGYWVLFLWTFLEGEAGLILAGFLAFQGYLTLPAVIVTALGGAF
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDQFYFYLGRWKGPWLLKMFTLVARKFRKALRLIEKYGTFVAFISRYTYGFRIVLPIIL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMSSFPASRFLSLNMVSALLWATLFSLAGYFFGKSASLFVEDVSRYEMHLLAALAGLIFC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MWLSHFVHAWFRRKPARTRLKRIRDSRKTVDQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLGGYVNHLLGEYLQQHGYWVLFLWTFLEGEAGLILAGFLAFQGYLTLPAVIVTALGGAF
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDQFYFYLGRWKGPWLLKMFTLVARKFRKALRLIEKYGTFVAFISRYTYGFRIVLPIIL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMSSFPASRFLSLNMVSALLWATLFSLAGYFFGKSASLFVEDVSRYEMHLLAALAGLIFC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MWLSHFVHAWFRRKPARTRLKRIRDSRKTVDQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]