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The map label for this gene is psd

Identifier: 78222477

GI number: 78222477

Start: 1423613

End: 1424269

Strand: Direct

Name: psd

Synonym: Gmet_1263

Alternate gene names: 78222477

Gene position: 1423613-1424269 (Clockwise)

Preceding gene: 78222476

Following gene: 78222478

Centisome position: 35.61

GC content: 54.64

Gene sequence:

>657_bases
ATGCGCAACTCAAATACTCCCATAGCTGCGGAGGGATACCCCTTTATCGCCGGTGCCGTGCTCATTGCCGTAGTGCTGGC
CGTCCTCGGCTCAAAAATTCCCGCATTCTTCTTTCTGGCGGTGTTTTTCGGAGCGTTGACCCTTTTTATCGTTTTTTTCT
TTCGTAATCCCGAGCGCACCACCCCGGCGGATGAAAACGCGGTGATTGCTCCGGCTGACGGCGTGGTCATCTACCTGGGG
CCTTCCCGCGAAGAGCACTTGGGCGAGGAGATGACCAAGATCAGCATCTTCATGTCGGTCTTCAATGTTCATGTGAACAG
GGTGCCGATAACCGGCAAAGTGCTGGACACCTTTTACATCAAGGGGAAGTTCCTTGATGTTCGCGACGACCGGGCAACGT
TCGAGAACGAACAGGCGGGGCTTATCATTGAAACTGCCAAGGGAATGAAGATGATTGTTGTTCAGGTGGCAGGCCTCATC
GCACGCCGCATTGTCTGTTACGCTGCCAAGGGAGATCAACTCGTGCGCGGAAAACGTTACGGTTTGATCCGCTTCGGTTC
CCGCCTCGATGTGTATCTCCCGAGTGAAACTGCAGTACGCGTCAGGATGGGCGACAAGACCGTTGCCGGCGAAACTATCC
TGGGGTTACTGCCATGA

Upstream 100 bases:

>100_bases
GACCCAAACCGTATCCGGTCTCTTTGTGGTTTGCGCGAAAAATGCGGTCGCCACGGGGCGGTCGTTTGGTTTATTATTGT
CCAAAACCCGAGGTTCTCTG

Downstream 100 bases:

>100_bases
ATGGTGAAAAGATTGACATGAGCGAGAGCATGCGGAAGGGGATTTACATCCTTCCGAATCTCTTTACCACGGGAAGCCTG
TTTGCCGGCTTTTACGGTAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRNSNTPIAAEGYPFIAGAVLIAVVLAVLGSKIPAFFFLAVFFGALTLFIVFFFRNPERTTPADENAVIAPADGVVIYLG
PSREEHLGEEMTKISIFMSVFNVHVNRVPITGKVLDTFYIKGKFLDVRDDRATFENEQAGLIIETAKGMKMIVVQVAGLI
ARRIVCYAAKGDQLVRGKRYGLIRFGSRLDVYLPSETAVRVRMGDKTVAGETILGLLP

Sequences:

>Translated_218_residues
MRNSNTPIAAEGYPFIAGAVLIAVVLAVLGSKIPAFFFLAVFFGALTLFIVFFFRNPERTTPADENAVIAPADGVVIYLG
PSREEHLGEEMTKISIFMSVFNVHVNRVPITGKVLDTFYIKGKFLDVRDDRATFENEQAGLIIETAKGMKMIVVQVAGLI
ARRIVCYAAKGDQLVRGKRYGLIRFGSRLDVYLPSETAVRVRMGDKTVAGETILGLLP
>Mature_218_residues
MRNSNTPIAAEGYPFIAGAVLIAVVLAVLGSKIPAFFFLAVFFGALTLFIVFFFRNPERTTPADENAVIAPADGVVIYLG
PSREEHLGEEMTKISIFMSVFNVHVNRVPITGKVLDTFYIKGKFLDVRDDRATFENEQAGLIIETAKGMKMIVVQVAGLI
ARRIVCYAAKGDQLVRGKRYGLIRFGSRLDVYLPSETAVRVRMGDKTVAGETILGLLP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_GEOMG (Q39W75)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_384224.1
- STRING:   Q39W75
- GeneID:   3739762
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_1263
- NMPDR:   fig|269799.3.peg.1941
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   GMET269799:GMET_1263-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23917; Mature: 23917

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSNTPIAAEGYPFIAGAVLIAVVLAVLGSKIPAFFFLAVFFGALTLFIVFFFRNPERT
CCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPADENAVIAPADGVVIYLGPSREEHLGEEMTKISIFMSVFNVHVNRVPITGKVLDTFYI
CCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHEEEEEEE
KGKFLDVRDDRATFENEQAGLIIETAKGMKMIVVQVAGLIARRIVCYAAKGDQLVRGKRY
EEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCEECCCCC
GLIRFGSRLDVYLPSETAVRVRMGDKTVAGETILGLLP
EEEEECCEEEEEECCCCEEEEEECCCEECCCEEEECCC
>Mature Secondary Structure
MRNSNTPIAAEGYPFIAGAVLIAVVLAVLGSKIPAFFFLAVFFGALTLFIVFFFRNPERT
CCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPADENAVIAPADGVVIYLGPSREEHLGEEMTKISIFMSVFNVHVNRVPITGKVLDTFYI
CCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHEEEEEEE
KGKFLDVRDDRATFENEQAGLIIETAKGMKMIVVQVAGLIARRIVCYAAKGDQLVRGKRY
EEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCEECCCCC
GLIRFGSRLDVYLPSETAVRVRMGDKTVAGETILGLLP
EEEEECCEEEEEECCCCEEEEEECCCEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA