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The map label for this gene is hypD [H]

Identifier: 78188508

GI number: 78188508

Start: 632445

End: 633530

Strand: Reverse

Name: hypD [H]

Synonym: Cag_0530

Alternate gene names: 78188508

Gene position: 633530-632445 (Counterclockwise)

Preceding gene: 78188509

Following gene: 78188507

Centisome position: 24.63

GC content: 50.37

Gene sequence:

>1086_bases
ATGAAATATATTGATGAATATCGTGATCCAGCGCTTGCACAAACGTTGCTTGAGGAGATTAAGCGAACGGTAACACGCCA
TTGGACAATTATGGAAATTTGTGGTGGGCAAACGCATTCCATTAAGCGCTATGGCATAGATCAGCTTTTGCCGAAAGAGA
TAGAATTAGTGCATGGACCAGGTTGCCCTGTCTGTGTAACGCCGCTGGAATCCATTGAGCGTGCGCTTGCAATTGCTGCT
CGCAATGAAGTGATTTTTACCAGCTTTGGCGATATGCTGCGTGTGCCCGGAACGTCGCGCGATCTTTTTATGGTTCGTAG
TGCAGGCGGCGATGTGCGCATTGTTGCCTCTCCGCTTGATGCGTTGGAACTTGCGCGCTGCAATCCGCAAAAAGAGGTGG
TCTTTTTTGCTGTGGGTTTTGAAACCACCGCTCCCGCAAATGCTATGGCAGTGTGGCAAGCGGCTCGTGAAGGCATTGAG
AATTTTAGCCTTCTCGTTAGTCAAGTAATGGTTCCACCCGCTATGCGCGTTATTCTTTCATCGCCCGATAACCGAGTACA
AGCATTTCTTGCCGCTGGGCATGTGTGTGCGGTGATGGGCTATGAGGAGTATGAGCCTATTGCGCAAGAGTTTCATCTGC
CTATTGTGCCGACAGGTTTTGAGCCGATTGACTTGCTTGCGGGCATTTTGCAAACCGTTACAATGCTTGAAGGTGGAGAA
TCGGGCATTGTGAATCGCTATGGGCGCGTGGTGAGCCGCGAAGGTAACCCGATGGCGAAGCAAATGTTGGCTGATGTGTT
TCGGGTTGTTGATCGCCCGTGGCGAGGTATTGGCATGATTCCTGCAAGCGGGCTTGCGCTTCGAGCTGAATATGTCCGTT
ACGATGCCGAGCAAAAATTTGATGTCAGCTCAATTTGTGCGCTTGAATCGCCACTTTGCATGAGTGGCAGTGTGCTGCAA
GGATTGATAAAGCCCGATGCGTGCCCTGCATTTGGGCAAGAATGTACGCCTGAGCATCCACTTGGCGCAACCATGGTTTC
ATCCGAAGGCGCTTGCGCTGCGTATTATAACTATGGGTTGTATTGA

Upstream 100 bases:

>100_bases
GGCGATGGAGAGCTTGAAACTGTGGCAGGAGTTAAGCGACAAGGGGGCTTTTCAGCCACTTGATGATGCCAATTCATCAA
CGCAATCATGCTTGTAGCCA

Downstream 100 bases:

>100_bases
ACTTTGATTCATCCAATAAAGCAAATCCCCAACACCATGTTTGCCGAGTGGCTAACCATTACCCAAAATGGATAGCACTC
AATTGCTTACCAACTTTGAA

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKYIDEYRDPALAQTLLEEIKRTVTRHWTIMEICGGQTHSIKRYGIDQLLPKEIELVHGPGCPVCVTPLESIERALAIAA
RNEVIFTSFGDMLRVPGTSRDLFMVRSAGGDVRIVASPLDALELARCNPQKEVVFFAVGFETTAPANAMAVWQAAREGIE
NFSLLVSQVMVPPAMRVILSSPDNRVQAFLAAGHVCAVMGYEEYEPIAQEFHLPIVPTGFEPIDLLAGILQTVTMLEGGE
SGIVNRYGRVVSREGNPMAKQMLADVFRVVDRPWRGIGMIPASGLALRAEYVRYDAEQKFDVSSICALESPLCMSGSVLQ
GLIKPDACPAFGQECTPEHPLGATMVSSEGACAAYYNYGLY

Sequences:

>Translated_361_residues
MKYIDEYRDPALAQTLLEEIKRTVTRHWTIMEICGGQTHSIKRYGIDQLLPKEIELVHGPGCPVCVTPLESIERALAIAA
RNEVIFTSFGDMLRVPGTSRDLFMVRSAGGDVRIVASPLDALELARCNPQKEVVFFAVGFETTAPANAMAVWQAAREGIE
NFSLLVSQVMVPPAMRVILSSPDNRVQAFLAAGHVCAVMGYEEYEPIAQEFHLPIVPTGFEPIDLLAGILQTVTMLEGGE
SGIVNRYGRVVSREGNPMAKQMLADVFRVVDRPWRGIGMIPASGLALRAEYVRYDAEQKFDVSSICALESPLCMSGSVLQ
GLIKPDACPAFGQECTPEHPLGATMVSSEGACAAYYNYGLY
>Mature_361_residues
MKYIDEYRDPALAQTLLEEIKRTVTRHWTIMEICGGQTHSIKRYGIDQLLPKEIELVHGPGCPVCVTPLESIERALAIAA
RNEVIFTSFGDMLRVPGTSRDLFMVRSAGGDVRIVASPLDALELARCNPQKEVVFFAVGFETTAPANAMAVWQAAREGIE
NFSLLVSQVMVPPAMRVILSSPDNRVQAFLAAGHVCAVMGYEEYEPIAQEFHLPIVPTGFEPIDLLAGILQTVTMLEGGE
SGIVNRYGRVVSREGNPMAKQMLADVFRVVDRPWRGIGMIPASGLALRAEYVRYDAEQKFDVSSICALESPLCMSGSVLQ
GLIKPDACPAFGQECTPEHPLGATMVSSEGACAAYYNYGLY

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=46.1748633879781, Blast_Score=346, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39449; Mature: 39449

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIDEYRDPALAQTLLEEIKRTVTRHWTIMEICGGQTHSIKRYGIDQLLPKEIELVHGP
CCCHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCHHHHCCHHHEEEECC
GCPVCVTPLESIERALAIAARNEVIFTSFGDMLRVPGTSRDLFMVRSAGGDVRIVASPLD
CCCEEECCHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCEEEEEECCCCEEEEECCHH
ALELARCNPQKEVVFFAVGFETTAPANAMAVWQAAREGIENFSLLVSQVMVPPAMRVILS
HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
SPDNRVQAFLAAGHVCAVMGYEEYEPIAQEFHLPIVPTGFEPIDLLAGILQTVTMLEGGE
CCCHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SGIVNRYGRVVSREGNPMAKQMLADVFRVVDRPWRGIGMIPASGLALRAEYVRYDAEQKF
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
DVSSICALESPLCMSGSVLQGLIKPDACPAFGQECTPEHPLGATMVSSEGACAAYYNYGL
CHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
Y
C
>Mature Secondary Structure
MKYIDEYRDPALAQTLLEEIKRTVTRHWTIMEICGGQTHSIKRYGIDQLLPKEIELVHGP
CCCHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCHHHHCCHHHEEEECC
GCPVCVTPLESIERALAIAARNEVIFTSFGDMLRVPGTSRDLFMVRSAGGDVRIVASPLD
CCCEEECCHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCEEEEEECCCCEEEEECCHH
ALELARCNPQKEVVFFAVGFETTAPANAMAVWQAAREGIENFSLLVSQVMVPPAMRVILS
HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
SPDNRVQAFLAAGHVCAVMGYEEYEPIAQEFHLPIVPTGFEPIDLLAGILQTVTMLEGGE
CCCHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SGIVNRYGRVVSREGNPMAKQMLADVFRVVDRPWRGIGMIPASGLALRAEYVRYDAEQKF
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
DVSSICALESPLCMSGSVLQGLIKPDACPAFGQECTPEHPLGATMVSSEGACAAYYNYGL
CHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]