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The map label for this gene is yrbE [C]

Identifier: 78188458

GI number: 78188458

Start: 559930

End: 560724

Strand: Reverse

Name: yrbE [C]

Synonym: Cag_0480

Alternate gene names: 78188458

Gene position: 560724-559930 (Counterclockwise)

Preceding gene: 78188459

Following gene: 78188457

Centisome position: 21.8

GC content: 46.92

Gene sequence:

>795_bases
ATGCCACTATCGTTTGCAAGAACAAGCATCAATAAGCTCTCAGCACAGGCGAAAGAGTTTTTTTTCACCATGCAGGAGTT
TTTTCTTTTTTCGCTTCGGGCATTTATGGCAATCCCCAAAATGGGGCGTTATTGGCGCGATGTGTTTGATCAAGCCACCA
TTTGTGGCACCGATTCTATTCCCATTGTGCTGGTAAGCTCCATCTCTATTGGTGCCTTACTTGCTGTTGAGGTTGGCAAT
TTGCTTGAAGATTTTGGTGCCAAAACCATGTTGGGGCGCTCAACCGCCTTATCGGTTATTCGTGAATTAGGACCGCTCTT
GATGGGCTTAATGCTTTCAGCACGCTTTGGCTCCCGCAACGGTGCTGAATTGGGTGCCATGCAAATTTCCGAACAAATTG
ATGCACTTCGCGCCTTTGGCACTGACCCTGTCGCAAAGTTAGTAATGCCCCGCTTAGTGGCAGCTCTTGTGATGTTTTTA
CCCCTCACTGCCCTCTCCGACTTTGCTGGCTTGCAAAGTGCCGCCTACATGGCAGAGCATTACCACCATATTGATGCGGG
CATTTTTTGGAATGCCGTTTATCCCCGCTTAGTGCTCAAAGATTTTGTGCTGGGCTTTCTTAAAGCGCCTGTTTTTGCTG
TTATCATTACTTTAGTGAGTAGCTTTAACGGCTTTAACGCCCGTGGTGGCACGGCTGGCGTTGGGCGTGCAACCATTAAA
GGCATTGTGGTTTCTTCGGGTTTAGTGCTTATTGCTAACTTTTACGTTTCCAAGTTAGTATTGGAAAACATGTAA

Upstream 100 bases:

>100_bases
CATTCCCTACGACTGGGTAAAAAAAATGAAAAGTCGGCTCATGCTCGCTTAAACGGCATGGCTCATGCTGTAACTCTTTT
TTTCTCTTTGGATTTTTTCC

Downstream 100 bases:

>100_bases
CGTATGATTGAATTACGCAACGTTAGTTTGAAATATGGGGAACGGGAGATTCTTAAGAATGTTTCCCTTACCATTCGCGA
CAACACCATTACCGCTATTT

Product: putative ABC transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MPLSFARTSINKLSAQAKEFFFTMQEFFLFSLRAFMAIPKMGRYWRDVFDQATICGTDSIPIVLVSSISIGALLAVEVGN
LLEDFGAKTMLGRSTALSVIRELGPLLMGLMLSARFGSRNGAELGAMQISEQIDALRAFGTDPVAKLVMPRLVAALVMFL
PLTALSDFAGLQSAAYMAEHYHHIDAGIFWNAVYPRLVLKDFVLGFLKAPVFAVIITLVSSFNGFNARGGTAGVGRATIK
GIVVSSGLVLIANFYVSKLVLENM

Sequences:

>Translated_264_residues
MPLSFARTSINKLSAQAKEFFFTMQEFFLFSLRAFMAIPKMGRYWRDVFDQATICGTDSIPIVLVSSISIGALLAVEVGN
LLEDFGAKTMLGRSTALSVIRELGPLLMGLMLSARFGSRNGAELGAMQISEQIDALRAFGTDPVAKLVMPRLVAALVMFL
PLTALSDFAGLQSAAYMAEHYHHIDAGIFWNAVYPRLVLKDFVLGFLKAPVFAVIITLVSSFNGFNARGGTAGVGRATIK
GIVVSSGLVLIANFYVSKLVLENM
>Mature_263_residues
PLSFARTSINKLSAQAKEFFFTMQEFFLFSLRAFMAIPKMGRYWRDVFDQATICGTDSIPIVLVSSISIGALLAVEVGNL
LEDFGAKTMLGRSTALSVIRELGPLLMGLMLSARFGSRNGAELGAMQISEQIDALRAFGTDPVAKLVMPRLVAALVMFLP
LTALSDFAGLQSAAYMAEHYHHIDAGIFWNAVYPRLVLKDFVLGFLKAPVFAVIITLVSSFNGFNARGGTAGVGRATIKG
IVVSSGLVLIANFYVSKLVLENM

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=261, Percent_Identity=31.4176245210728, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 28588; Mature: 28457

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLSFARTSINKLSAQAKEFFFTMQEFFLFSLRAFMAIPKMGRYWRDVFDQATICGTDSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PIVLVSSISIGALLAVEVGNLLEDFGAKTMLGRSTALSVIRELGPLLMGLMLSARFGSRN
CEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAELGAMQISEQIDALRAFGTDPVAKLVMPRLVAALVMFLPLTALSDFAGLQSAAYMAEH
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHHIDAGIFWNAVYPRLVLKDFVLGFLKAPVFAVIITLVSSFNGFNARGGTAGVGRATIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
GIVVSSGLVLIANFYVSKLVLENM
HHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA