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The map label for this gene is ydiF [H]

Identifier: 78188312

GI number: 78188312

Start: 373499

End: 375469

Strand: Reverse

Name: ydiF [H]

Synonym: Cag_0334

Alternate gene names: 78188312

Gene position: 375469-373499 (Counterclockwise)

Preceding gene: 78188316

Following gene: 78188305

Centisome position: 14.6

GC content: 45.61

Gene sequence:

>1971_bases
ATGTTTGAAGCGCGCAATCTCTCCCTTAGCATTGGAACAAAACAACTGTTAAACGACACCTCCTTCCGCATTGGCGACAC
TGACCGTGTTGCGCTGGTGGGCTTAAACGGCACAGGCAAATCCACGCTGATGCGCCTTATTAGCAACACCTCTCCCGATA
GCAGCACGCTACGAGTGGGAGGCGACTTCATAAAATCAGCCGATACCACCATTGGTTACTTGCCACAAGAGATTTCGTTT
GAAGATGATCTTGAAAAAAGTGCGCTTCACTACGCCCTGCAAGCCAATAAAGAACTTTTTGACCTTTCCGAAACCATTAC
GCGCTTTGAGCACGAACTTGCTCTCCCCGAACACGATTACGAAAGCGAAGCATATCACCGCTTAATTGAGCGTTTTTCCG
ACGCCATGCACAACTTTGAGCGACTTGGTGGCTACACCATGCAATCGGATGCCGAAAAAGTGTTAGCAGGCTTAGGGTTT
AGTGAAATTGATTTTCATAAAAAAGTAAAAGCTTTTTCAGGTGGCTGGCAAATGCGCCTGCACATTGCAAAGCTACTTTT
GCAAAACCCAACCCTGCTTTTGCTTGACGAGCCAACCAACCACCTTGATATTGACTCGTTACGCTGGCTTGAAAACTATT
TAACGAATTACGAGCACAGCTACATCATTATTTCGCACGATCGTTTTTTTCTCGATAAGCTCACTACACGCACACTTGAA
ATTGCCTTTGAGCGCATTAACGAGTACAAAGGCAATTATTCAACCTACGAAAAAGAGAAGGTTGAACGCTATGAGCTTTT
GATGAGCAAATATCAAAACGATTTAAAGAAAATGGCGGAGCTGAACTCCTTTGTAGAGCGCTTTCGCTACAAAGCCACCA
AAGCACGTCAAGCCCAAAGTCGCCTCAAGCAAATGGAAAAGCTTGAAAAAAACTTAGTGGCTCCCGAAGAGGATTTATCG
CAAATCTCTTTCCGCTTCCCCAAAGCACAGCCTTCAGGACGAGAGGTAATGCGTCTTGACGGAGTAAAAAAATCCTACAC
ACTCCCTGACGGCAGTCGTAAAGAGGTACTCAAACGGATTGATTTGGAAATTATGCGTGGCGACCGCATTGCCATTGTCG
GCTCAAACGGTGCAGGAAAAAGTACCTTTTGCAAAATTCTCGCCAATGAATTGGATTACGAAGGCAAACTCACCACTGGG
CACAACGTATCGCTCAACTACTTCGCCCAACACCAAACCGACACCCTTGCAACCGAAAAAAGCATCTACATCGAAATGAT
GGATTCGGCTCCAAATTCCGAAGCACAAAAAAAAGTACGCGACATTCTTGGCTGCTTTTTGTTTAGCGGCGACACCGTCA
ACAAAAAAATTAAAGTGCTTTCGGGAGGCGAAAAATCGCGCGTTGCACTTGCAAAAATTCTCTTGCAAGCCTCCAACCTG
CTCATTATGGACGAGCCAACCAACCATCTTGATATGCGCTCCAAAGAGATGCTGATTGAGTCGCTTGAAAACTACGATGG
CACGCTCTTGCTTGTTAGCCACGACCGCTACTTTCTTGATAGCCTTGTTAACAAAGTGGTAGAAATTAAAAACGGCACCC
TCCAACTCTACTTAGGAACTTACGCCGAGTACCTTGAAAAATCGGAAAAAACGCGCCAAGCCGAAGAACAAGCCGAAGCG
CTTCAGCGCCAAAAAGAGCAAGCTGCCGCCAAAGCTGCAATAAAAGCTGAAGAACAACGCGCCGCTGCTGCAACGCCAGC
GCCCGCAAAAGCTAAAAACAGCAAAAAATTAGAGGCTATTGAGAAAAAAATTAATCAGCTTGAGCAGCAAAAAGAGGAGA
TGGAAAGAATAATGGCTACGGAGGATTTCTATAAAAAAAGCAAGGAAGAAAATGCGCGCACGCTTGAGCATTACCACAAA
CTATGCGATGAACTAAATGCACTGTTTGCGGAATGGGAGACGTTGGGGTAA

Upstream 100 bases:

>100_bases
GGCAGGCAGAAAAGAACAATTTTTCTCCCAACCTCCATTAGAGAGCCGAAAGGTAAAATTGTATCTTCAGCGCCAAAGTA
ACCTCTCTACCCTTTACCTT

Downstream 100 bases:

>100_bases
GAGTGAATAATGTGCAAAGTTATAACCTTCAAAATCATCAGAAAATGCCTATGAATTAATATATTGAGCAAAATAAGCAT
CAATTTCAGAACGCAACTCG

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MFEARNLSLSIGTKQLLNDTSFRIGDTDRVALVGLNGTGKSTLMRLISNTSPDSSTLRVGGDFIKSADTTIGYLPQEISF
EDDLEKSALHYALQANKELFDLSETITRFEHELALPEHDYESEAYHRLIERFSDAMHNFERLGGYTMQSDAEKVLAGLGF
SEIDFHKKVKAFSGGWQMRLHIAKLLLQNPTLLLLDEPTNHLDIDSLRWLENYLTNYEHSYIIISHDRFFLDKLTTRTLE
IAFERINEYKGNYSTYEKEKVERYELLMSKYQNDLKKMAELNSFVERFRYKATKARQAQSRLKQMEKLEKNLVAPEEDLS
QISFRFPKAQPSGREVMRLDGVKKSYTLPDGSRKEVLKRIDLEIMRGDRIAIVGSNGAGKSTFCKILANELDYEGKLTTG
HNVSLNYFAQHQTDTLATEKSIYIEMMDSAPNSEAQKKVRDILGCFLFSGDTVNKKIKVLSGGEKSRVALAKILLQASNL
LIMDEPTNHLDMRSKEMLIESLENYDGTLLLVSHDRYFLDSLVNKVVEIKNGTLQLYLGTYAEYLEKSEKTRQAEEQAEA
LQRQKEQAAAKAAIKAEEQRAAAATPAPAKAKNSKKLEAIEKKINQLEQQKEEMERIMATEDFYKKSKEENARTLEHYHK
LCDELNALFAEWETLG

Sequences:

>Translated_656_residues
MFEARNLSLSIGTKQLLNDTSFRIGDTDRVALVGLNGTGKSTLMRLISNTSPDSSTLRVGGDFIKSADTTIGYLPQEISF
EDDLEKSALHYALQANKELFDLSETITRFEHELALPEHDYESEAYHRLIERFSDAMHNFERLGGYTMQSDAEKVLAGLGF
SEIDFHKKVKAFSGGWQMRLHIAKLLLQNPTLLLLDEPTNHLDIDSLRWLENYLTNYEHSYIIISHDRFFLDKLTTRTLE
IAFERINEYKGNYSTYEKEKVERYELLMSKYQNDLKKMAELNSFVERFRYKATKARQAQSRLKQMEKLEKNLVAPEEDLS
QISFRFPKAQPSGREVMRLDGVKKSYTLPDGSRKEVLKRIDLEIMRGDRIAIVGSNGAGKSTFCKILANELDYEGKLTTG
HNVSLNYFAQHQTDTLATEKSIYIEMMDSAPNSEAQKKVRDILGCFLFSGDTVNKKIKVLSGGEKSRVALAKILLQASNL
LIMDEPTNHLDMRSKEMLIESLENYDGTLLLVSHDRYFLDSLVNKVVEIKNGTLQLYLGTYAEYLEKSEKTRQAEEQAEA
LQRQKEQAAAKAAIKAEEQRAAAATPAPAKAKNSKKLEAIEKKINQLEQQKEEMERIMATEDFYKKSKEENARTLEHYHK
LCDELNALFAEWETLG
>Mature_656_residues
MFEARNLSLSIGTKQLLNDTSFRIGDTDRVALVGLNGTGKSTLMRLISNTSPDSSTLRVGGDFIKSADTTIGYLPQEISF
EDDLEKSALHYALQANKELFDLSETITRFEHELALPEHDYESEAYHRLIERFSDAMHNFERLGGYTMQSDAEKVLAGLGF
SEIDFHKKVKAFSGGWQMRLHIAKLLLQNPTLLLLDEPTNHLDIDSLRWLENYLTNYEHSYIIISHDRFFLDKLTTRTLE
IAFERINEYKGNYSTYEKEKVERYELLMSKYQNDLKKMAELNSFVERFRYKATKARQAQSRLKQMEKLEKNLVAPEEDLS
QISFRFPKAQPSGREVMRLDGVKKSYTLPDGSRKEVLKRIDLEIMRGDRIAIVGSNGAGKSTFCKILANELDYEGKLTTG
HNVSLNYFAQHQTDTLATEKSIYIEMMDSAPNSEAQKKVRDILGCFLFSGDTVNKKIKVLSGGEKSRVALAKILLQASNL
LIMDEPTNHLDMRSKEMLIESLENYDGTLLLVSHDRYFLDSLVNKVVEIKNGTLQLYLGTYAEYLEKSEKTRQAEEQAEA
LQRQKEQAAAKAAIKAEEQRAAAATPAPAKAKNSKKLEAIEKKINQLEQQKEEMERIMATEDFYKKSKEENARTLEHYHK
LCDELNALFAEWETLG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=32.2344322344322, Blast_Score=273, Evalue=4e-73,
Organism=Homo sapiens, GI10947137, Length=562, Percent_Identity=30.4270462633452, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI27881506, Length=562, Percent_Identity=30.4270462633452, Blast_Score=247, Evalue=3e-65,
Organism=Homo sapiens, GI10947135, Length=549, Percent_Identity=28.9617486338798, Blast_Score=208, Evalue=1e-53,
Organism=Homo sapiens, GI69354671, Length=549, Percent_Identity=28.9617486338798, Blast_Score=208, Evalue=1e-53,
Organism=Homo sapiens, GI255708477, Length=253, Percent_Identity=26.4822134387352, Blast_Score=66, Evalue=8e-11,
Organism=Escherichia coli, GI1789751, Length=642, Percent_Identity=34.4236760124611, Blast_Score=348, Evalue=6e-97,
Organism=Escherichia coli, GI1787041, Length=547, Percent_Identity=33.8208409506399, Blast_Score=305, Evalue=8e-84,
Organism=Escherichia coli, GI1787182, Length=657, Percent_Identity=29.5281582952816, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=28.75226039783, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI1787164, Length=245, Percent_Identity=31.8367346938775, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=177, Percent_Identity=28.2485875706215, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787112, Length=298, Percent_Identity=25.8389261744966, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786398, Length=223, Percent_Identity=25.5605381165919, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=550, Percent_Identity=32.9090909090909, Blast_Score=266, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI17555318, Length=551, Percent_Identity=28.8566243194192, Blast_Score=234, Evalue=8e-62,
Organism=Caenorhabditis elegans, GI17559834, Length=533, Percent_Identity=30.0187617260788, Blast_Score=230, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17555800, Length=520, Percent_Identity=22.3076923076923, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=544, Percent_Identity=33.2720588235294, Blast_Score=275, Evalue=2e-74,
Organism=Saccharomyces cerevisiae, GI6320874, Length=553, Percent_Identity=30.9222423146474, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6325030, Length=414, Percent_Identity=28.743961352657, Blast_Score=141, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6324314, Length=255, Percent_Identity=29.0196078431373, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=257, Percent_Identity=29.5719844357977, Blast_Score=113, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24666836, Length=543, Percent_Identity=32.780847145488, Blast_Score=287, Evalue=2e-77,
Organism=Drosophila melanogaster, GI24641342, Length=553, Percent_Identity=30.7414104882459, Blast_Score=266, Evalue=5e-71,
Organism=Drosophila melanogaster, GI24642252, Length=560, Percent_Identity=30.1785714285714, Blast_Score=259, Evalue=4e-69,
Organism=Drosophila melanogaster, GI18859989, Length=560, Percent_Identity=30.1785714285714, Blast_Score=259, Evalue=4e-69,
Organism=Drosophila melanogaster, GI281363262, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24653245, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550390, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 75017; Mature: 75017

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEARNLSLSIGTKQLLNDTSFRIGDTDRVALVGLNGTGKSTLMRLISNTSPDSSTLRVG
CCCCCCCEEECCHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEC
GDFIKSADTTIGYLPQEISFEDDLEKSALHYALQANKELFDLSETITRFEHELALPEHDY
HHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
ESEAYHRLIERFSDAMHNFERLGGYTMQSDAEKVLAGLGFSEIDFHKKVKAFSGGWQMRL
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHH
HIAKLLLQNPTLLLLDEPTNHLDIDSLRWLENYLTNYEHSYIIISHDRFFLDKLTTRTLE
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
IAFERINEYKGNYSTYEKEKVERYELLMSKYQNDLKKMAELNSFVERFRYKATKARQAQS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKQMEKLEKNLVAPEEDLSQISFRFPKAQPSGREVMRLDGVKKSYTLPDGSRKEVLKRI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHH
DLEIMRGDRIAIVGSNGAGKSTFCKILANELDYEGKLTTGHNVSLNYFAQHQTDTLATEK
HHHEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCCH
SIYIEMMDSAPNSEAQKKVRDILGCFLFSGDTVNKKIKVLSGGEKSRVALAKILLQASNL
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCE
LIMDEPTNHLDMRSKEMLIESLENYDGTLLLVSHDRYFLDSLVNKVVEIKNGTLQLYLGT
EEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEHHH
YAEYLEKSEKTRQAEEQAEALQRQKEQAAAKAAIKAEEQRAAAATPAPAKAKNSKKLEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
EKKINQLEQQKEEMERIMATEDFYKKSKEENARTLEHYHKLCDELNALFAEWETLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFEARNLSLSIGTKQLLNDTSFRIGDTDRVALVGLNGTGKSTLMRLISNTSPDSSTLRVG
CCCCCCCEEECCHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEC
GDFIKSADTTIGYLPQEISFEDDLEKSALHYALQANKELFDLSETITRFEHELALPEHDY
HHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
ESEAYHRLIERFSDAMHNFERLGGYTMQSDAEKVLAGLGFSEIDFHKKVKAFSGGWQMRL
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHH
HIAKLLLQNPTLLLLDEPTNHLDIDSLRWLENYLTNYEHSYIIISHDRFFLDKLTTRTLE
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
IAFERINEYKGNYSTYEKEKVERYELLMSKYQNDLKKMAELNSFVERFRYKATKARQAQS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKQMEKLEKNLVAPEEDLSQISFRFPKAQPSGREVMRLDGVKKSYTLPDGSRKEVLKRI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHH
DLEIMRGDRIAIVGSNGAGKSTFCKILANELDYEGKLTTGHNVSLNYFAQHQTDTLATEK
HHHEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCCH
SIYIEMMDSAPNSEAQKKVRDILGCFLFSGDTVNKKIKVLSGGEKSRVALAKILLQASNL
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCE
LIMDEPTNHLDMRSKEMLIESLENYDGTLLLVSHDRYFLDSLVNKVVEIKNGTLQLYLGT
EEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEHHH
YAEYLEKSEKTRQAEEQAEALQRQKEQAAAKAAIKAEEQRAAAATPAPAKAKNSKKLEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
EKKINQLEQQKEEMERIMATEDFYKKSKEENARTLEHYHKLCDELNALFAEWETLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]