Click here to switch to the map view.

The map label for this gene is 78188238

Identifier: 78188238

GI number: 78188238

Start: 287058

End: 288269

Strand: Reverse

Name: 78188238

Synonym: Cag_0257

Alternate gene names: NA

Gene position: 288269-287058 (Counterclockwise)

Preceding gene: 78188239

Following gene: 78188237

Centisome position: 11.21

GC content: 39.93

Gene sequence:

>1212_bases
ATGAGACTGAAAAGTATGAGGTTAGAAAACTTTAGAGCAGTAGAACATGCTGTTATAGAGTTTGGAAATCGCTTAACATT
GCTCATAGGCGCTAACGGTTCAGGAAAAACCACTATTCTTGATGGTATTGCTATAGCTCTTGGAGCGGCATTGACCTACC
TGCCTACTCTCTCTGGACGTTCTTTTAAAAAGGGCGATCTTCATCAGCGTCATAATTCCATTGCTCCCTATACTCGTATT
GCTCTTGAAACCACGACAGGCTTAAAGTGGGATAGAATTCAGCGTCGCGATAAAAGTAAATCTACCAGCAAACTAGTGCC
TGCTGCTGATGGCATTCGTGCTCTTGAACAGTTTCTTGATGCTACTATTCTTGAGCCAATGAATCAAGGAAGCGACTATC
TTCTTCCATTGTTTATCTATTATGGTGTAAGCCGAGCATTGCTTGATGTGCCTGCAAGTCGTAAGGGATTTACAAAAAAG
CAGCATCGTTTTGATGCACTTGTTCATTGTTTACATGCTGATAGCCGATTTCGATCGGCATTTATGTGGTTCTACAACAA
AGAACTGGAAGAAAATCGCTTGCAGAAAGAGAAGAAAAGCTTTGAGGTTACTTTAAGAGAGCTGGATGTTGTGCGTTCGG
CAATCACGGCAATGTTTCCTGATATTTCTGAGCCACATATTGCGCTCAATCCTTTACGTTTTGTTGTGAGACAGCAAGGT
GAGCTAATGGATATTGCACAGTTAAGCGATGGATATAAAACACTGCTTGGCGTTGTTATTGATTTAAGTTCACGGCTTGC
GATGGCAAATCCTCATCTTGATGATCCGCTTGCAGCCGAAGCTATTGTGATGATTGATGAAGTTGACCTGCATCTTCACC
CTTCTTGGCAGCAACATGTGGTTGGAGATCTTTTACGGACATTCAAAAATACGCAGTTTATTATTACCACGCATAGTCCG
TTTATTGTTGAAGCAATTAATAACCATATAAAGCGCCAACAAATAGAGGGTTTACCAATTAATAATAATGAAGTAAATCA
ATTATTGCCCCTCCGTTCAAGTGATGTTAAAGCATACTTGATGAGCGATACCATTGAGATGTTAATGAATAACGATGTTG
CATTGCTTGATGATAAGTTGTTAGAATATTTTAACTCCCAAAATCAACTTTACGATAAAATGCGAGATCTTGAATGGGAG
CATAAAGGATGA

Upstream 100 bases:

>100_bases
GGTAATTGAAGCGGCTGATGCCAACAACCTCGCTATGGTCTTTACCGGCATGAGGCATTTCAAGCACTAAGAGTTATTGT
AACCGAATAAACATGCGCCT

Downstream 100 bases:

>100_bases
TAGATGTTAAGCCATTCGAGAATTGTGTATGCCAAAAGATGAATAATCATCTTTCTTTATGTAAATCAGAACTCACATTA
TCTGAAAAAGGCAAGAGTGT

Product: ATPase

Products: NA

Alternate protein names: SMC Domain Protein; SMC Domain-Containing Protein; AAA ATPase; Antigen PgaA; RecF/RecN/SMC N Terminal Domain; PgaA Protein; RecF/RecN/SMC Family Protein

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGRSFKKGDLHQRHNSIAPYTRI
ALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQFLDATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKK
QHRFDALVHCLHADSRFRSAFMWFYNKELEENRLQKEKKSFEVTLRELDVVRSAITAMFPDISEPHIALNPLRFVVRQQG
ELMDIAQLSDGYKTLLGVVIDLSSRLAMANPHLDDPLAAEAIVMIDEVDLHLHPSWQQHVVGDLLRTFKNTQFIITTHSP
FIVEAINNHIKRQQIEGLPINNNEVNQLLPLRSSDVKAYLMSDTIEMLMNNDVALLDDKLLEYFNSQNQLYDKMRDLEWE
HKG

Sequences:

>Translated_403_residues
MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGRSFKKGDLHQRHNSIAPYTRI
ALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQFLDATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKK
QHRFDALVHCLHADSRFRSAFMWFYNKELEENRLQKEKKSFEVTLRELDVVRSAITAMFPDISEPHIALNPLRFVVRQQG
ELMDIAQLSDGYKTLLGVVIDLSSRLAMANPHLDDPLAAEAIVMIDEVDLHLHPSWQQHVVGDLLRTFKNTQFIITTHSP
FIVEAINNHIKRQQIEGLPINNNEVNQLLPLRSSDVKAYLMSDTIEMLMNNDVALLDDKLLEYFNSQNQLYDKMRDLEWE
HKG
>Mature_403_residues
MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGRSFKKGDLHQRHNSIAPYTRI
ALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQFLDATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKK
QHRFDALVHCLHADSRFRSAFMWFYNKELEENRLQKEKKSFEVTLRELDVVRSAITAMFPDISEPHIALNPLRFVVRQQG
ELMDIAQLSDGYKTLLGVVIDLSSRLAMANPHLDDPLAAEAIVMIDEVDLHLHPSWQQHVVGDLLRTFKNTQFIITTHSP
FIVEAINNHIKRQQIEGLPINNNEVNQLLPLRSSDVKAYLMSDTIEMLMNNDVALLDDKLLEYFNSQNQLYDKMRDLEWE
HKG

Specific function: Unknown

COG id: COG3950

COG function: function code R; Predicted ATP-binding protein involved in virulence

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45919; Mature: 45919

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGR
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SFKKGDLHQRHNSIAPYTRIALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQFLD
CCCCCCHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHH
ATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKKQHRFDALVHCLHADSRFRSA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
FMWFYNKELEENRLQKEKKSFEVTLRELDVVRSAITAMFPDISEPHIALNPLRFVVRQQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCC
ELMDIAQLSDGYKTLLGVVIDLSSRLAMANPHLDDPLAAEAIVMIDEVDLHLHPSWQQHV
CHHHHHHHCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHCEEEEEEEECEEECCCHHHHH
VGDLLRTFKNTQFIITTHSPFIVEAINNHIKRQQIEGLPINNNEVNQLLPLRSSDVKAYL
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHH
MSDTIEMLMNNDVALLDDKLLEYFNSQNQLYDKMRDLEWEHKG
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGR
CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SFKKGDLHQRHNSIAPYTRIALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQFLD
CCCCCCHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHH
ATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKKQHRFDALVHCLHADSRFRSA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
FMWFYNKELEENRLQKEKKSFEVTLRELDVVRSAITAMFPDISEPHIALNPLRFVVRQQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCC
ELMDIAQLSDGYKTLLGVVIDLSSRLAMANPHLDDPLAAEAIVMIDEVDLHLHPSWQQHV
CHHHHHHHCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHCEEEEEEEECEEECCCHHHHH
VGDLLRTFKNTQFIITTHSPFIVEAINNHIKRQQIEGLPINNNEVNQLLPLRSSDVKAYL
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHH
MSDTIEMLMNNDVALLDDKLLEYFNSQNQLYDKMRDLEWEHKG
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA