Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
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Accession | NC_007510 |
Length | 3,694,126 |
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The map label for this gene is 78067581
Identifier: 78067581
GI number: 78067581
Start: 3256938
End: 3257804
Strand: Reverse
Name: 78067581
Synonym: Bcep18194_A6112
Alternate gene names: NA
Gene position: 3257804-3256938 (Counterclockwise)
Preceding gene: 78067582
Following gene: 78067580
Centisome position: 88.19
GC content: 71.28
Gene sequence:
>867_bases ATGACGTTTCCGTGCATTGCGGCCGCGCGTCGCTTCGATCCGGCCGCGCACCTGCGTTTCGAGATTGCCGGCCAGGCGGT CGGCTGGGTGCGCCGCGAGGACGTCGCGATGCTCGCCCGCTGGCCCGACGTGTTCGAGCTGACCGACGCGCGCGTCGTGC TGTCGTCGCGCTACGACTCGGTCGACGCACGCAGCATGGCGCTGGCGAGCGCGATCGGCGCGCTCGCGGCCGAAGGCGCG ATTCCCGGCTGGCGCGACGAGATCTACGCGATCCGCAACCGCTTCGACGATCCGCCGCTCGCGTACATCGAGCGCGCCGC GTCGCGCTTCTTCGGTACGCAGACTTACGCGGTGCATCTGAACGGCATCGTAGAATATGCGGTTGCGCCGGGCGAGCCGT CCGCCGCGGCCGTCCCGCAGATGTGGCTCGGCCGCCGCAGCGAGACCAAGGCAACCGACCCCGGCATGCTCGACAACGTC GTCGCGGGCGGGATCGGCTGGGGCTTGGGCGTTCACGAGACGCTCGCGAAGGAGTGCTGGGAAGAAGCCGGCATTCCGCC CGAACTGGCCGCGCGCGCGATCGCGGGCCGCGCGGTGCAGGTGCTGTGCTCGCTGCCAGAAGGCACGCAGTCCGAACTGA TCTTCGTGTACGACCTGCCGCTGCCGCGCGACTTCGCGCCGCGCAACCAGGACGGCGAAGTGGCCGAGCACCTGCTGGCC GGCGTGCCCGAGGTGATCGGCTGGCTGCTCGCCGGCCGCGCGACGATGGATGCAAGCCTCGCGACGCTCGACACGCTGCT GCGCCACCGCTGGATCCCGGCGGCCGACGCGGCAGGCATCGACGCACTGTTCGCACCGGCCGCGTGA
Upstream 100 bases:
>100_bases GGCTGAAGCGCCGCCCGAAGGCCGGCGTGTGGCTCGACCGGATCGCCGGCGCGACGTTCATCGCGATCGGCATCCGCGTC GCGCTGAAGGACTGATCGCG
Downstream 100 bases:
>100_bases CGCGTGCCGCGCATGCAGCCTGGCGGCGCGAACGGGCAATTTGACGAATACGGAAACGAAGGGAGTAGCGGTCATGCCGA CCGATCACAGCTTTATCTTG
Product: NUDIX hydrolase
Products: NA
Alternate protein names: Thiamin Pyrophosphokinase; NUDIX Domain-Containing Protein; Nucleoside Diphosphate; Thiamine Pyrophosphokinase; Nucleoside Diphosphate Hydrolase Protein; NTP Pyrophosphohydrolase; MutT/Nudix Family Protein; NUDIX Domain Family Protein; Nudix Family Protein; NTP Pyrophosphohydrolase Including Oxidative Damage Repair; Nudix Hydrolase; NUDIX Domain-Containing; Hydrolase NUDIX Family
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRREDVAMLARWPDVFELTDARVVLSSRYDSVDARSMALASAIGALAAEGA IPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHLNGIVEYAVAPGEPSAAAVPQMWLGRRSETKATDPGMLDNV VAGGIGWGLGVHETLAKECWEEAGIPPELAARAIAGRAVQVLCSLPEGTQSELIFVYDLPLPRDFAPRNQDGEVAEHLLA GVPEVIGWLLAGRATMDASLATLDTLLRHRWIPAADAAGIDALFAPAA
Sequences:
>Translated_288_residues MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRREDVAMLARWPDVFELTDARVVLSSRYDSVDARSMALASAIGALAAEGA IPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHLNGIVEYAVAPGEPSAAAVPQMWLGRRSETKATDPGMLDNV VAGGIGWGLGVHETLAKECWEEAGIPPELAARAIAGRAVQVLCSLPEGTQSELIFVYDLPLPRDFAPRNQDGEVAEHLLA GVPEVIGWLLAGRATMDASLATLDTLLRHRWIPAADAAGIDALFAPAA >Mature_287_residues TFPCIAAARRFDPAAHLRFEIAGQAVGWVRREDVAMLARWPDVFELTDARVVLSSRYDSVDARSMALASAIGALAAEGAI PGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHLNGIVEYAVAPGEPSAAAVPQMWLGRRSETKATDPGMLDNVV AGGIGWGLGVHETLAKECWEEAGIPPELAARAIAGRAVQVLCSLPEGTQSELIFVYDLPLPRDFAPRNQDGEVAEHLLAG VPEVIGWLLAGRATMDASLATLDTLLRHRWIPAADAAGIDALFAPAA
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322602, Length=247, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30999; Mature: 30867
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFPCIAAARRFDPAAHLRFEIAGQAVGWVRREDVAMLARWPDVFELTDARVVLSSRYDS CCCCHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCCCC VDARSMALASAIGALAAEGAIPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHL CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE NGIVEYAVAPGEPSAAAVPQMWLGRRSETKATDPGMLDNVVAGGIGWGLGVHETLAKECW CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHH EEAGIPPELAARAIAGRAVQVLCSLPEGTQSELIFVYDLPLPRDFAPRNQDGEVAEHLLA HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH GVPEVIGWLLAGRATMDASLATLDTLLRHRWIPAADAAGIDALFAPAA CCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC >Mature Secondary Structure TFPCIAAARRFDPAAHLRFEIAGQAVGWVRREDVAMLARWPDVFELTDARVVLSSRYDS CCCHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCCCC VDARSMALASAIGALAAEGAIPGWRDEIYAIRNRFDDPPLAYIERAASRFFGTQTYAVHL CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE NGIVEYAVAPGEPSAAAVPQMWLGRRSETKATDPGMLDNVVAGGIGWGLGVHETLAKECW CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHH EEAGIPPELAARAIAGRAVQVLCSLPEGTQSELIFVYDLPLPRDFAPRNQDGEVAEHLLA HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH GVPEVIGWLLAGRATMDASLATLDTLLRHRWIPAADAAGIDALFAPAA CCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA