Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 78067576

GI number: 78067576

Start: 3249550

End: 3250104

Strand: Reverse

Name: ssb [H]

Synonym: Bcep18194_A6107

Alternate gene names: 78067576

Gene position: 3250104-3249550 (Counterclockwise)

Preceding gene: 78067577

Following gene: 78067575

Centisome position: 87.98

GC content: 67.75

Gene sequence:

>555_bases
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCAACGACCGACCGCTATAAAGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTCTTCGGCCGTCTGGCGGAAATCGTCAGCGAGTACCTGAAGAAGGGTTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGATCGTTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGTGCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGCGGCG
GCGGTGGCCGTGGCGAGCAGATGGAGCGCGGCGGTGGCGGCGGTGGTCGTGCCGGCGGCGCAGCGCGTGGCGGTGCAGGC
GGCGGCGCGCAAAGCCGTCCGAGCGCACCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATCCCGTTCTGA

Upstream 100 bases:

>100_bases
CTCATTTCGGGCAGGTACCGGCGGCGTTCGCCGGCTTGCCCGGCGGGCCGCACCGACAGCATGAGCGGGCGGCCCGGCAT
CGAATTTACTGGAGAAACAC

Downstream 100 bases:

>100_bases
TCGGCAAGTCGGCATCCGCATCACGATGGGCCCGAATGTCCGAGTCAAGCCAGTTGCTTGGCCCGGGTCTTCGGGCCTTG
TTTCGTTTACGTCGATGTTC

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGGDEGGYGGGYGGGGGGGRGEQMERGGGGGGRAGGAARGGAG
GGAQSRPSAPAGGGFDEMDDDIPF

Sequences:

>Translated_184_residues
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGGDEGGYGGGYGGGGGGGRGEQMERGGGGGGRAGGAARGGAG
GGAQSRPSAPAGGGFDEMDDDIPF
>Mature_183_residues
ASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEGR
IRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGGDEGGYGGGYGGGGGGGRGEQMERGGGGGGRAGGAARGGAGG
GAQSRPSAPAGGGFDEMDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=189, Percent_Identity=53.968253968254, Blast_Score=179, Evalue=9e-47,
Organism=Drosophila melanogaster, GI85725234, Length=102, Percent_Identity=38.2352941176471, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24647376, Length=102, Percent_Identity=38.2352941176471, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18787; Mature: 18656

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFG
CCCCCEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
RLAEIVSEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGG
HHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
DEGGYGGGYGGGGGGGRGEQMERGGGGGGRAGGAARGGAGGGAQSRPSAPAGGGFDEMDD
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DIPF
CCCC
>Mature Secondary Structure 
ASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFG
CCCCEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
RLAEIVSEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGAGGGGGGG
HHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
DEGGYGGGYGGGGGGGRGEQMERGGGGGGRAGGAARGGAGGGAQSRPSAPAGGGFDEMDD
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DIPF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948488 [H]