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The map label for this gene is ndoA [H]

Identifier: 78067478

GI number: 78067478

Start: 3143996

End: 3144304

Strand: Reverse

Name: ndoA [H]

Synonym: Bcep18194_A6009

Alternate gene names: 78067478

Gene position: 3144304-3143996 (Counterclockwise)

Preceding gene: 78067479

Following gene: 78067477

Centisome position: 85.12

GC content: 65.7

Gene sequence:

>309_bases
ATGACGCAATGGATCGACACCGGCGCGCTCGACGACATCGACGACGAAGACGTCGCGCGCTTCGACCATGCCGGCCACAC
GTACGCGATCTACCGCATCGACGGCGAAGTCTATGCGAGCGACGGCCTGTGCACGCACGAGCACGTGCATCTCGCGGACG
GGCTCGTGATCGACCACGTGATCGAATGCCCGAAGCACAACGGGCGCTTCGACGTGCGTGACGGCCGGCCGCTGTCCGCG
CCCGCCTGCGAGAAGCTGCGCACGTACCGCGCGAAGATCGAAGACGGTCGCATCCTGATCGAGGTGTGA

Upstream 100 bases:

>100_bases
CCGGCAGACGCGCGACCCGTCCCATTACGTCGTGCGGCCCGTGCCGGATGCCGCGCGTGCCTGACCGACATCGAACCTTC
CAACCGAGGAGACAAGCAAC

Downstream 100 bases:

>100_bases
CGCGATGACGAACGACCGGGTGATGGCGATCGTCGGCGCGGGCCACGCGGGCGGCCGCGCGGCGCAGGTGCTGCGTGAGT
CCGGCTGGGGCGGGCGGATC

Product: Rieske (2Fe-2S) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MTQWIDTGALDDIDDEDVARFDHAGHTYAIYRIDGEVYASDGLCTHEHVHLADGLVIDHVIECPKHNGRFDVRDGRPLSA
PACEKLRTYRAKIEDGRILIEV

Sequences:

>Translated_102_residues
MTQWIDTGALDDIDDEDVARFDHAGHTYAIYRIDGEVYASDGLCTHEHVHLADGLVIDHVIECPKHNGRFDVRDGRPLSA
PACEKLRTYRAKIEDGRILIEV
>Mature_101_residues
TQWIDTGALDDIDDEDVARFDHAGHTYAIYRIDGEVYASDGLCTHEHVHLADGLVIDHVIECPKHNGRFDVRDGRPLSAP
ACEKLRTYRAKIEDGRILIEV

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. This subunit is a 2Fe-2S ferredoxin that transfers electrons

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 11515; Mature: 11384

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQWIDTGALDDIDDEDVARFDHAGHTYAIYRIDGEVYASDGLCTHEHVHLADGLVIDHV
CCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCEEEECCCCCCCCEEECCCCCHHHHH
IECPKHNGRFDVRDGRPLSAPACEKLRTYRAKIEDGRILIEV
HHCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
TQWIDTGALDDIDDEDVARFDHAGHTYAIYRIDGEVYASDGLCTHEHVHLADGLVIDHV
CCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCEEEECCCCCCCCEEECCCCCHHHHH
IECPKHNGRFDVRDGRPLSAPACEKLRTYRAKIEDGRILIEV
HHCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA