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The map label for this gene is yahB [H]

Identifier: 78067165

GI number: 78067165

Start: 2803475

End: 2804359

Strand: Direct

Name: yahB [H]

Synonym: Bcep18194_A5696

Alternate gene names: 78067165

Gene position: 2803475-2804359 (Clockwise)

Preceding gene: 78067163

Following gene: 78067171

Centisome position: 75.89

GC content: 70.73

Gene sequence:

>885_bases
ATGCGCCACGCCCCCGAAGCCCTGCTCGCCTTCGCCGAAGCCGCGCTGCTCGGTTCGTTCACGGCCGCCGCGCGCAAGCT
CGGCAAGCGCCAGTCGACCGTGTCGGAGGCGATCGCGAACCTCGAGATCGATCTCGGCGTGCAGTTGTTCGACCGCTCGA
CGCGCACGCCGACGCTGACCGACGCCGGGCGCGCGCTGCTGCCGCAGGTGCAGCGCGCACTCGAGGCCGGCGCAGCGATC
GACCGCACGGCCGCGCGGCTCGCGCGTGGCGAGGAAGCACGGCTGACGCTCGTCGTGTCCGATACGTACCAGTCGAAGCG
CTACGAAGAAACGTTGATGGCGCTCGAACGGCGCTTTCCGGCACTCGAGCTCGAATGCCAGATCGCCGAGCACGAAGACG
TGCTCGACCTGATCCAGCAGGGGCGCGCGCAGCTCGGGCTGATGGCCGCACGCGCGGCCTACCCGGCCGATATCGGCGCG
GCGACGATTGCGGAGGAGTCGGAAATCGGGCTGTTCGTCGGCCGCACGCACGCGCTCGCCGAATACGGCGACGCCGACGT
GCCGCACGCCGCGTTGCGCGACGTGCGCGAACTGCGCCTCAATACCTATGTGAAAACGGAAGGCCGCGGCGCCGACGACC
GGATCGTCGTCGGCACGCAACACTGGCTGGCACCGAGCTACCTGATGCTGCTGGAGATGGCCGTGCTGGGGTTCGGCTGG
GCCGAACTGCCGCGCTGGATGGTCGACCACTTTGCGCGCGATCGCCTGTGCGAGCTGCGCGCACGCGGCTGGCCGCGCCG
CGTGCGGGTCGATGCGGTCTGGTCGCGCAACCGGCCGCTCGGCCCGGTCGGCTCATGGCTGCTCGACGCGATGCTGGCCG
CGTAG

Upstream 100 bases:

>100_bases
TCGTCTACTTCGTTCATGGCGGCCATTTTGATCGGCGGGACCGTATGAATCCAGTTTGATATCATCGGTTTTACCAATAT
ATCGCCACCAGGAGCGCCGC

Downstream 100 bases:

>100_bases
CGGCGTTTGCCGGCGCACCGGCGGCTGCACGCGGGCCAGCCGGCTCCGGTGAATCAGAAGCCGCGCGACAGCACCGCCGC
GCCGATCGTGACGACGCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRTPTLTDAGRALLPQVQRALEAGAAI
DRTAARLARGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHEDVLDLIQQGRAQLGLMAARAAYPADIGA
ATIAEESEIGLFVGRTHALAEYGDADVPHAALRDVRELRLNTYVKTEGRGADDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVDHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPVGSWLLDAMLAA

Sequences:

>Translated_294_residues
MRHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRTPTLTDAGRALLPQVQRALEAGAAI
DRTAARLARGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHEDVLDLIQQGRAQLGLMAARAAYPADIGA
ATIAEESEIGLFVGRTHALAEYGDADVPHAALRDVRELRLNTYVKTEGRGADDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVDHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPVGSWLLDAMLAA
>Mature_294_residues
MRHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRTPTLTDAGRALLPQVQRALEAGAAI
DRTAARLARGEEARLTLVVSDTYQSKRYEETLMALERRFPALELECQIAEHEDVLDLIQQGRAQLGLMAARAAYPADIGA
ATIAEESEIGLFVGRTHALAEYGDADVPHAALRDVRELRLNTYVKTEGRGADDRIVVGTQHWLAPSYLMLLEMAVLGFGW
AELPRWMVDHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPVGSWLLDAMLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=286, Percent_Identity=26.5734265734266, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=32.9411764705882, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=27.7027027027027, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32491; Mature: 32491

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRTPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPQVQRALEAGAAIDRTAARLARGEEARLTLVVSDTYQSKRYEETLMALERRFP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
ALELECQIAEHEDVLDLIQQGRAQLGLMAARAAYPADIGAATIAEESEIGLFVGRTHALA
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECHHHHH
EYGDADVPHAALRDVRELRLNTYVKTEGRGADDRIVVGTQHWLAPSYLMLLEMAVLGFGW
HCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCH
AELPRWMVDHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPVGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRHAPEALLAFAEAALLGSFTAAARKLGKRQSTVSEAIANLEIDLGVQLFDRSTRTPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPQVQRALEAGAAIDRTAARLARGEEARLTLVVSDTYQSKRYEETLMALERRFP
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
ALELECQIAEHEDVLDLIQQGRAQLGLMAARAAYPADIGAATIAEESEIGLFVGRTHALA
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECHHHHH
EYGDADVPHAALRDVRELRLNTYVKTEGRGADDRIVVGTQHWLAPSYLMLLEMAVLGFGW
HCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCH
AELPRWMVDHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPVGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]