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The map label for this gene is ydcO [H]

Identifier: 78067145

GI number: 78067145

Start: 2782402

End: 2783613

Strand: Direct

Name: ydcO [H]

Synonym: Bcep18194_A5676

Alternate gene names: 78067145

Gene position: 2782402-2783613 (Clockwise)

Preceding gene: 78067144

Following gene: 78067146

Centisome position: 75.32

GC content: 69.22

Gene sequence:

>1212_bases
ATGAACCCCTTGCCCACCGCGAGCGCCAGCCGCGCCGGCGGCCGCCGCTTTTTCGCCGATACCTCCGTGTCGGCACTCGT
CGCCGGCTTCGTCGCGATGATGACGGGCTACACGAGCTCGCTCGTGCTGATGTTCCAGGCCGGCCGCGCCGCCCACCTCA
CCGATGCGCAGATCTCGTCGTGGATCTGGGCGCTGTCGATCGGCATGGCGCTGACGACGATCGGCCTGTCGCTGCGCTTT
CGCGCGCCCGTCGTCGTCGCGTGGTCGACGCCCGGCGCCGCGCTGCTGATCGCATCGCTGCCCGGCGTGCCCTACCCCGA
GGCGATCGGTGCATTCGTCGTCTGCGCGGTGCTGCTGATGGCCGTCGGCTTGAGCGGGCTGTTCGACACGCTGATGCGCA
AGATTCCGGCCGGCATCGCCGCCGCCTTGCTCGCGGGCATCCTGTTCGAGATCGGCATCGAGATCTTCCGCGCCGCGCAG
TTCCAGACGGCGCTCGTGCTCGCGATGTTCTTCACGTACCTGATCGTCAAGCGGCTCGCGCCGCGTTACGCGATCGTGAC
GACGCTGATCGTCGGCACGGCGGTCGCCGGCGGTCTCGGCCTGCTCGACTTCAGCGGCTTTCACGTCGCGTTCGCGAAGC
CCGTGTTCACGATGCCCGCGTTCTCGATCGCGTCGATCGTCAGCATCGGCATTCCGCTGTTCGTCGTCGCGATGGCGTCG
CAGAACGTGCCGGGTATCGCGGTGCTGCGCGCGGACGGTTATCAGACCCCGTCGTCGCCGCTGATCGCGACCACCGGCCT
CGCGTCGCTGCTGCTCGCGCCGTTCGGCTCGCACGGCGTCAACCTCGCGGCGATCACGGCCGCGATCTGCACGGGCCCGG
AAGCGCACGAGGATCATGCGAAGCGCTACACGGCCGCCGTGTGGTGCGGCACGTTCTACCTGATCGCGGGGATCTTCGGC
GCGACGATCGCCGCGCTGTTCGCGGCGCTGCCGAAGGCGCTCGTCGTGTCGGTCGCCGCGCTCGCGCTGTTCGGCTCGAT
CATGAGCGGCCTCGCGAACGCGATGCAGGACGTGAAGCAGCGCGAAGCCGCGCTCGTCACGTTCATGGTCACTGCGTCGG
GCCTCACGCTGCTGTCGATCGGCTCGGCATTCTGGGGGCTCGTCGCCGGGATCGTCACGCAGGTGATCCTGAACGCGCGC
CGCCCCGCGTGA

Upstream 100 bases:

>100_bases
CACGCTCGCAGGCCTCGAAACCGCGATGCGCGCACTCAGCAAGTAACGACACCCACCAAGACACGAAGGCCGCGTCCGAA
CGGCCTCCCCCGGAGATAGC

Downstream 100 bases:

>100_bases
TGCGGCACGGCGCCCGCCGCTGCGGCCATCGGACACGCCGGAACGTGCCCGACACGAATCGGGCCTAGAATAGCGGATCG
GAGGCGGTGCCCGGCGCCGC

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNPLPTASASRAGGRRFFADTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSIGMALTTIGLSLRF
RAPVVVAWSTPGAALLIASLPGVPYPEAIGAFVVCAVLLMAVGLSGLFDTLMRKIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSGFHVAFAKPVFTMPAFSIASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYQTPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA

Sequences:

>Translated_403_residues
MNPLPTASASRAGGRRFFADTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSIGMALTTIGLSLRF
RAPVVVAWSTPGAALLIASLPGVPYPEAIGAFVVCAVLLMAVGLSGLFDTLMRKIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSGFHVAFAKPVFTMPAFSIASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYQTPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA
>Mature_403_residues
MNPLPTASASRAGGRRFFADTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISSWIWALSIGMALTTIGLSLRF
RAPVVVAWSTPGAALLIASLPGVPYPEAIGAFVVCAVLLMAVGLSGLFDTLMRKIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSGFHVAFAKPVFTMPAFSIASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYQTPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=375, Percent_Identity=47.7333333333333, Blast_Score=323, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41553; Mature: 41553

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLPTASASRAGGRRFFADTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISS
CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHHH
WIWALSIGMALTTIGLSLRFRAPVVVAWSTPGAALLIASLPGVPYPEAIGAFVVCAVLLM
HHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AVGLSGLFDTLMRKIPAGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKRLA
HHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRYAIVTTLIVGTAVAGGLGLLDFSGFHVAFAKPVFTMPAFSIASIVSIGIPLFVVAMAS
CHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHC
QNVPGIAVLRADGYQTPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHA
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHH
KRYTAAVWCGTFYLIAGIFGATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNARRPA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNPLPTASASRAGGRRFFADTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLTDAQISS
CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHHH
WIWALSIGMALTTIGLSLRFRAPVVVAWSTPGAALLIASLPGVPYPEAIGAFVVCAVLLM
HHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AVGLSGLFDTLMRKIPAGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKRLA
HHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRYAIVTTLIVGTAVAGGLGLLDFSGFHVAFAKPVFTMPAFSIASIVSIGIPLFVVAMAS
CHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHC
QNVPGIAVLRADGYQTPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHA
CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHH
KRYTAAVWCGTFYLIAGIFGATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNARRPA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]