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The map label for this gene is yeaM [H]

Identifier: 78066832

GI number: 78066832

Start: 2423386

End: 2424321

Strand: Direct

Name: yeaM [H]

Synonym: Bcep18194_A5363

Alternate gene names: 78066832

Gene position: 2423386-2424321 (Clockwise)

Preceding gene: 78066830

Following gene: 78066835

Centisome position: 65.6

GC content: 67.95

Gene sequence:

>936_bases
ATGCGCTTTCGCGGCGCCTTCTACAATAACGGCATCGCCGCCGCGCTGCCCGAATCGTTCATGAACCCGCCGTTCCAAGC
CGACGTACCGAATCCGTACGTCATCGACATTCCGCCCGAATTCGCGCCGACCGCCGTCCATCCGATGCGCGTGCGCGCAC
GGCAGGTCAATACCGGGTATCGCATCCCGCTGCATACGCATGCGTGGGCGCAGCTCGCGTACGCATCGCGCGGCGTGCTG
CGCGTCGCGACCACCGGCACGACCTGGATGGTGCCGCCGTCCCGCGCGATCTGGGTGCCGCCGCGCGTGACGCACGAGGT
CGTGATCGTCGAAGAGGCGTATCTGCGCACGCTGTATATCGATGAGTCGATCGTGCCGGAGGGGCTCGACGCGTGCCGCG
TCGTCGAAGTGACGGGGCTGCTGCGCGAACTGATCGTCGCACTCGACGCGCGCGACCTGAGTACCCCGCGCGAGCGCCTG
CTGTGCGGGCTGGTGCTCGACGAGCTGACCCACGCCGAACCGCTGCCGCTCGCCGTGCCGATGCCCGACGAAAAAAGGCT
GCGCATGCTGTGCGAAGCGGTCCTCGCGCACCCGGCGCACGCGGAGTCGCTCGAGCATTGGGCCAGTGAGGTCGGCGCGA
GCACACGCACGATTTCGCGGCTCTTCAAGCAGGAACTGGGGGTGAGCTTTTCGCAGTGGCGCCAACAGGCGCTGCTGGCG
CGGGCCATTCCGCTGCTGAACCAGGGACGCCCGCTGTCGCATATCGCGCGCGAACTCGGCTACCAGAGCCAGAGCGCCTT
TTCGGCGATGTTCCGGCGTGCCTTCGGCGAAAGCCCGCGCGCATTCATGCTGCGCGGCTACGAGCATCGCGGCCCGGAAG
GCAGCCTCGCGGACGACGAAACCCCGGACGACGACACGATCGACGCTGTCCGCTGA

Upstream 100 bases:

>100_bases
CGAACCCGCACGCGCGCCCGGCCCCGCGGCGGTCCCGAAATCGCCTGGTGCCCACACAAAGTTCATTTGAACGCGGCATG
ATCGCCCGACAAACCGCCGC

Downstream 100 bases:

>100_bases
ACGCCCGGCTACGGATCGTCAGGTCATCACACCGGCCGCACCATGTGGCGGATCGAGCCAAGTTGCGCGAGCCGCGACCC
GGCAACCTGATAGCCCATGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRFRGAFYNNGIAAALPESFMNPPFQADVPNPYVIDIPPEFAPTAVHPMRVRARQVNTGYRIPLHTHAWAQLAYASRGVL
RVATTGTTWMVPPSRAIWVPPRVTHEVVIVEEAYLRTLYIDESIVPEGLDACRVVEVTGLLRELIVALDARDLSTPRERL
LCGLVLDELTHAEPLPLAVPMPDEKRLRMLCEAVLAHPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLA
RAIPLLNQGRPLSHIARELGYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGPEGSLADDETPDDDTIDAVR

Sequences:

>Translated_311_residues
MRFRGAFYNNGIAAALPESFMNPPFQADVPNPYVIDIPPEFAPTAVHPMRVRARQVNTGYRIPLHTHAWAQLAYASRGVL
RVATTGTTWMVPPSRAIWVPPRVTHEVVIVEEAYLRTLYIDESIVPEGLDACRVVEVTGLLRELIVALDARDLSTPRERL
LCGLVLDELTHAEPLPLAVPMPDEKRLRMLCEAVLAHPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLA
RAIPLLNQGRPLSHIARELGYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGPEGSLADDETPDDDTIDAVR
>Mature_311_residues
MRFRGAFYNNGIAAALPESFMNPPFQADVPNPYVIDIPPEFAPTAVHPMRVRARQVNTGYRIPLHTHAWAQLAYASRGVL
RVATTGTTWMVPPSRAIWVPPRVTHEVVIVEEAYLRTLYIDESIVPEGLDACRVVEVTGLLRELIVALDARDLSTPRERL
LCGLVLDELTHAEPLPLAVPMPDEKRLRMLCEAVLAHPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLA
RAIPLLNQGRPLSHIARELGYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGPEGSLADDETPDDDTIDAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=32.7433628318584, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 34772; Mature: 34772

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRGAFYNNGIAAALPESFMNPPFQADVPNPYVIDIPPEFAPTAVHPMRVRARQVNTGY
CCCCCCCCCCCCHHHCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCE
RIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWVPPRVTHEVVIVEEAYLRTLYI
EEEECHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEECCCCCCEEEEEEEHHHHHHEEE
DESIVPEGLDACRVVEVTGLLRELIVALDARDLSTPRERLLCGLVLDELTHAEPLPLAVP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
MPDEKRLRMLCEAVLAHPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLA
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAIPLLNQGRPLSHIARELGYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGPEGSLADDE
HHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
TPDDDTIDAVR
CCCCCCCCCCC
>Mature Secondary Structure
MRFRGAFYNNGIAAALPESFMNPPFQADVPNPYVIDIPPEFAPTAVHPMRVRARQVNTGY
CCCCCCCCCCCCHHHCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCE
RIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWVPPRVTHEVVIVEEAYLRTLYI
EEEECHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEECCCCCCEEEEEEEHHHHHHEEE
DESIVPEGLDACRVVEVTGLLRELIVALDARDLSTPRERLLCGLVLDELTHAEPLPLAVP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
MPDEKRLRMLCEAVLAHPAHAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLA
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAIPLLNQGRPLSHIARELGYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGPEGSLADDE
HHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
TPDDDTIDAVR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]