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The map label for this gene is rpoE [H]

Identifier: 78066645

GI number: 78066645

Start: 2221920

End: 2222561

Strand: Reverse

Name: rpoE [H]

Synonym: Bcep18194_A5176

Alternate gene names: 78066645

Gene position: 2222561-2221920 (Counterclockwise)

Preceding gene: 78066646

Following gene: 78066644

Centisome position: 60.16

GC content: 71.5

Gene sequence:

>642_bases
GTGGGGCAAGCCGGACAGGCAGTCGATGAGCGGTCGGCGGACGACGCGGTTGCGCGCGGCGAGCGGTTTCGCGTGCTCGT
GCTGCCGCATCTCGACGCCGCGTACAACCTCGCGCGCTGGCTGAGCGGCAGCGCCGGCGATGCGGACGACGTCGTCCAGG
ACGCGTGCATGCGCGCGCTGCGCTTCGTCGATTCGTGTCGCGGCGACAACGCGCGGCCGTGGCTGCTGACGATCGTGCGC
CACACCTGGTACACCGAGTGGAGGCGCCGCACGCATGCGCACGAGGTTGCGCTGCCCGACACGCTCGACGACACCGACGT
GCCCGACGACTGGCAACCGGCGACCGACGATCCGCTCGCGCACCTGCTGCGCGGCGAGAACGTGCGGCTCGTGAATGAAG
CGCTCGCGAAGCTGCCGCCCGAATACCGCGAGGTGCTCGTGCTGCGCGAGATGGAGGACCTGAGTTACCGCGAGATTGCG
GCGATCGCGGACGTGCCGGTCGGCACGGTGATGTCGCGGCTCGCACGCGGCCGGCGCAAGCTTGCCGCGCTGCTGGGTGG
CCCGCCGGCACCGGCGGCCGAAGGCAGGCCGGGCCGTACGCCGGCTGGCGGAACCGCATCGGAGGCTATCGATGGACTGT
AA

Upstream 100 bases:

>100_bases
CGCAACGACGGTAAGGTCATCGAGCGCGCACGTTGCCGGTCTGTCCGGGCACCGTGCCCGGAACGGGCGCGGCTTCGGCC
GCCGGGACCAGGGAGGCCAT

Downstream 100 bases:

>100_bases
CGAAGCGCGAGCGTTGCTGGACGCGGACGTCGACCGCGAGCTGTCGGCGCCCGATGCGTTGCGGGTCCAGCAGCATGTCG
AAGGGTGCGAAGCGTGCCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MGQAGQAVDERSADDAVARGERFRVLVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVR
HTWYTEWRRRTHAHEVALPDTLDDTDVPDDWQPATDDPLAHLLRGENVRLVNEALAKLPPEYREVLVLREMEDLSYREIA
AIADVPVGTVMSRLARGRRKLAALLGGPPAPAAEGRPGRTPAGGTASEAIDGL

Sequences:

>Translated_213_residues
MGQAGQAVDERSADDAVARGERFRVLVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVR
HTWYTEWRRRTHAHEVALPDTLDDTDVPDDWQPATDDPLAHLLRGENVRLVNEALAKLPPEYREVLVLREMEDLSYREIA
AIADVPVGTVMSRLARGRRKLAALLGGPPAPAAEGRPGRTPAGGTASEAIDGL
>Mature_212_residues
GQAGQAVDERSADDAVARGERFRVLVLPHLDAAYNLARWLSGSAGDADDVVQDACMRALRFVDSCRGDNARPWLLTIVRH
TWYTEWRRRTHAHEVALPDTLDDTDVPDDWQPATDDPLAHLLRGENVRLVNEALAKLPPEYREVLVLREMEDLSYREIAA
IADVPVGTVMSRLARGRRKLAALLGGPPAPAAEGRPGRTPAGGTASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=173, Percent_Identity=33.5260115606936, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23332; Mature: 23201

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQAGQAVDERSADDAVARGERFRVLVLPHLDAAYNLARWLSGSAGDADDVVQDACMRAL
CCCCCCCHHHCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYTEWRRRTHAHEVALPDTLDDTDVPDDWQPATDDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
HLLRGENVRLVNEALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGTVMSRLARGRRK
HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGGPPAPAAEGRPGRTPAGGTASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQAGQAVDERSADDAVARGERFRVLVLPHLDAAYNLARWLSGSAGDADDVVQDACMRAL
CCCCCCHHHCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYTEWRRRTHAHEVALPDTLDDTDVPDDWQPATDDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
HLLRGENVRLVNEALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGTVMSRLARGRRK
HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGGPPAPAAEGRPGRTPAGGTASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]