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The map label for this gene is nlpD [C]

Identifier: 78066591

GI number: 78066591

Start: 2165523

End: 2166407

Strand: Reverse

Name: nlpD [C]

Synonym: Bcep18194_A5122

Alternate gene names: 78066591

Gene position: 2166407-2165523 (Counterclockwise)

Preceding gene: 78066592

Following gene: 78066590

Centisome position: 58.64

GC content: 67.12

Gene sequence:

>885_bases
ATGAGTATGTTGCGCGCGATGCAAAACAACCGTTCCAGGGAACCGCTCACGCTCGCCCAGCGCGCGATCTGCGTAGCTGC
GTTCTCCACGCTTCTGGCCGCCTGTGCGACGCGGCTCGACAACGCGCCCGTCGTCGATCGCTCCGGTTCGCTCGGCACGA
CCGGCACCGCGCAGCCCGCGGCGCCGCTCCCCCCGGCGCCGCCGGGTTACTACCGGGTGAAGCCGGGCGACACCCTGTAC
CGGATCGCACTCGAAAACGGGCAGAACTATCGCGACATCGCCGCGTGGAACAACCTGGTGAACCCGAATCAGATCGAAGT
CGACCAGCTGCTGCGTGTTTCGCCGCAAGCCGGTGCCGCCGTAGCGGGCACGCAGGTCGCCGCGCCGATCGCGGGCGCCG
CCGTTGCGACCGCGCCGCTCAGCAGCGGCCCCGCAACGCCGGCCGCCGGTACGTCGTCGGTCGCGACGCCGCCTGCCGCG
GCAGCCGCATCGAGCGATACGGCAGCCGCGCCGAGCGGCCCCGTGACGTTCGCGTGGCCCGCGCGCGGTCCCGTGCTGAA
CGGTTTCGACGACGCGAAGAACAAGGGCGTCAATATCGGCGGCACGGCCGGCGAGACCGTGAAGGCGGCGGCCGACGGTC
GCGTCGTCTACTCCGGCAATGGTCTGCGCGGCTACGGCAACCTCATTATCATCAAGCACGATGCAACTTACCTCACGGCG
TATGCACACAATCGCGCTTTGATGGTAAAAGAGGGGGACGCGGTAACGAAGGGGCAGAAGATCGCCGAGATGGGGAACAG
CGATTCCGACCGCGTGATGCTGCATTTCGAGGTTCGCCGGCAGGGTAAACCTGTCGATCCGCTGAAGTATTTGCCGCCTC
AATAA

Upstream 100 bases:

>100_bases
TGCTCACGCTCGTCGAGCGCGTCGCGCACGCGCAATGGCGGGAGTCACGGCTTGATCGCGTTTTCTTTGTCCCTTTAAAA
TCCGGAGTAATTTGAAACCG

Downstream 100 bases:

>100_bases
CCGAGACGACCATGCCGAAATCGAAGCGCCACGAGCCGCAAGCCGAGTCTGAGAAAATCAGTCGAGCCACGCAAGCATCG
GTGGGGCGAGCTGGTGCTTC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSMLRAMQNNRSREPLTLAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTGTAQPAAPLPPAPPGYYRVKPGDTLY
RIALENGQNYRDIAAWNNLVNPNQIEVDQLLRVSPQAGAAVAGTQVAAPIAGAAVATAPLSSGPATPAAGTSSVATPPAA
AAASSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGETVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTA
YAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_294_residues
MSMLRAMQNNRSREPLTLAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTGTAQPAAPLPPAPPGYYRVKPGDTLY
RIALENGQNYRDIAAWNNLVNPNQIEVDQLLRVSPQAGAAVAGTQVAAPIAGAAVATAPLSSGPATPAAGTSSVATPPAA
AAASSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGETVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTA
YAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_293_residues
SMLRAMQNNRSREPLTLAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTGTAQPAAPLPPAPPGYYRVKPGDTLYR
IALENGQNYRDIAAWNNLVNPNQIEVDQLLRVSPQAGAAVAGTQVAAPIAGAAVATAPLSSGPATPAAGTSSVATPPAAA
AASSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGETVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTAY
AHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=259, Percent_Identity=37.4517374517375, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI87082174, Length=226, Percent_Identity=40.7079646017699, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI87082297, Length=128, Percent_Identity=38.28125, Blast_Score=84, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30321; Mature: 30189

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLRAMQNNRSREPLTLAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTGTAQPA
CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
APLPPAPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLVNPNQIEVDQLLRVSPQAGAA
CCCCCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCEECHHHHHHCCCCCCCE
VAGTQVAAPIAGAAVATAPLSSGPATPAAGTSSVATPPAAAAASSDTAAAPSGPVTFAWP
ECCCHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECC
ARGPVLNGFDDAKNKGVNIGGTAGETVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTA
CCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCEEEEE
YAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
EECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMLRAMQNNRSREPLTLAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTGTAQPA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
APLPPAPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLVNPNQIEVDQLLRVSPQAGAA
CCCCCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCEECHHHHHHCCCCCCCE
VAGTQVAAPIAGAAVATAPLSSGPATPAAGTSSVATPPAAAAASSDTAAAPSGPVTFAWP
ECCCHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECC
ARGPVLNGFDDAKNKGVNIGGTAGETVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLTA
CCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCEEEEE
YAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
EECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]