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The map label for this gene is ompW [C]

Identifier: 78066521

GI number: 78066521

Start: 2089349

End: 2089990

Strand: Reverse

Name: ompW [C]

Synonym: Bcep18194_A5052

Alternate gene names: 78066521

Gene position: 2089990-2089349 (Counterclockwise)

Preceding gene: 78066522

Following gene: 78066519

Centisome position: 56.58

GC content: 63.08

Gene sequence:

>642_bases
ATGCATAAAACGATTCGAACTTGTGTCACCGCAGCGGCCGTTGCTGCCGCTTTCGCCGCGATGCCGTCGCTGTCGCACGC
GGCCTCGCCGGGCGAAGGCATCAACCAGGGCGACGTCCTGGTCCGGCTGCGTGCAATCAGCATCCAGCCGAACGAACGCG
CGAGCGACACGCTGGGCGCGCTCAACGTCGGCGTGAACAACGCGATCGTGCCCGAGCTCGACTTCACGTACATGATCCGC
GACTACCTCGGCGTCGAACTGATCCTCGGCACGTCGCGGCACCAGTTGACGTCGAGCCTCGGCAATCTCGGCGGCGTGGG
CGTGCTGCCGCCGACGCTGCTGCTGCAGTACCACTTCAACCATGCCGGCAAGGTGCGTCCGTATGTCGGCGCGGGCGTGA
ACTACACGTACTTCTACAACAACGGGCTCAACGTTGGCGGGCAGGGCGTGTCGATCAACAAGAGCAGCTTCGGCCCCGCG
TTGCAGTTCGGCGTGGACGTGCAGGTGACGAAGAAGATTTTCATGAACGTCGACGTGAAGAAGATCTGGATGAGCACCGA
TGCGACGCTTGGCGACAAGGGCATCGGCACGCTGCACATCGATCCGCTGATCGTCGGCGTGGGCGTCGGGATGAAGTTCT
AG

Upstream 100 bases:

>100_bases
CTGCGGCAAACCGTCCCACGTTTACGCTGGCTTGACGGATATCAAGACGATGAAAAGACCCTACAGGGAGAATGGAAACC
ATTCTTTGGGGGTCCGTACC

Downstream 100 bases:

>100_bases
ACGCGGCGGGAAAAGAACAGAGTTGGGGTTGGCGGCATGGCGGTCGGCATGCCGCTTTTTTTTTGCGCGGCGGATTTACA
GCTTGTCGTACTGGAAGCGC

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MHKTIRTCVTAAAVAAAFAAMPSLSHAASPGEGINQGDVLVRLRAISIQPNERASDTLGALNVGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQLTSSLGNLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGVNYTYFYNNGLNVGGQGVSINKSSFGPA
LQFGVDVQVTKKIFMNVDVKKIWMSTDATLGDKGIGTLHIDPLIVGVGVGMKF

Sequences:

>Translated_213_residues
MHKTIRTCVTAAAVAAAFAAMPSLSHAASPGEGINQGDVLVRLRAISIQPNERASDTLGALNVGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQLTSSLGNLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGVNYTYFYNNGLNVGGQGVSINKSSFGPA
LQFGVDVQVTKKIFMNVDVKKIWMSTDATLGDKGIGTLHIDPLIVGVGVGMKF
>Mature_213_residues
MHKTIRTCVTAAAVAAAFAAMPSLSHAASPGEGINQGDVLVRLRAISIQPNERASDTLGALNVGVNNAIVPELDFTYMIR
DYLGVELILGTSRHQLTSSLGNLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGVNYTYFYNNGLNVGGQGVSINKSSFGPA
LQFGVDVQVTKKIFMNVDVKKIWMSTDATLGDKGIGTLHIDPLIVGVGVGMKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=209, Percent_Identity=35.8851674641148, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22540; Mature: 22540

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKTIRTCVTAAAVAAAFAAMPSLSHAASPGEGINQGDVLVRLRAISIQPNERASDTLGA
CCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEE
LNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQLTSSLGNLGGVGVLPPTLLLQYHFN
EECCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHEEEECCC
HAGKVRPYVGAGVNYTYFYNNGLNVGGQGVSINKSSFGPALQFGVDVQVTKKIFMNVDVK
CCCCCCCEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEECCCCEEEEHHHHCCCCC
KIWMSTDATLGDKGIGTLHIDPLIVGVGVGMKF
EEEEECCCCCCCCCCEEEEECEEEEEECCCCCC
>Mature Secondary Structure
MHKTIRTCVTAAAVAAAFAAMPSLSHAASPGEGINQGDVLVRLRAISIQPNERASDTLGA
CCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEE
LNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQLTSSLGNLGGVGVLPPTLLLQYHFN
EECCCCCCCCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHEEEECCC
HAGKVRPYVGAGVNYTYFYNNGLNVGGQGVSINKSSFGPALQFGVDVQVTKKIFMNVDVK
CCCCCCCEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEECCCCEEEEHHHHCCCCC
KIWMSTDATLGDKGIGTLHIDPLIVGVGVGMKF
EEEEECCCCCCCCCCEEEEECEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]