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The map label for this gene is cmpR [H]

Identifier: 78066500

GI number: 78066500

Start: 2065225

End: 2066118

Strand: Reverse

Name: cmpR [H]

Synonym: Bcep18194_A5031

Alternate gene names: 78066500

Gene position: 2066118-2065225 (Counterclockwise)

Preceding gene: 78066503

Following gene: 78066499

Centisome position: 55.93

GC content: 71.25

Gene sequence:

>894_bases
ATGACCCCGGATCAACTGATAACGTTCGCCGCCGTTGCCGAGCACCTGAACATCAGCCACGCCGCCGTGGCGCTGCATCT
GTCGCAGCCGGCCGTGTCGGGCCAGTTGCGGCTGCTGCAGGACGAATTCGGCGAGCCGCTGTACCAGCGCGAAGGCCGCG
GCATCCGCCTGACCCCGGTCGGCGAACAGCTCGCGCAGTACGCGAAGGCGCAACGCGATACCTTTGCGCAGGCGCGCGCG
TTTCGCGACGCGGTACGCGGCCTCGAGGCCGGCACGCTGCGCATCGGCGCGAGCACGACGCCCGCGAGCTATCTGCTGCC
GTACCTGATTGCGGCGTTTCAGCCCAGCGCGCCGCGCGTGGCGATCCACACGATGAGCGGCAACACGGCCGACGTGGTTG
CGGCGCTGCCGTCGCTCGATATCGCGATGATCGAAGGGCCGCCCGGCGAGGCACTGCCGCCGGGCACGGCGGTGCATGCG
TGGCGCGAGGACGAGATCGTGGCGATCGTGCCGACCGGCCATCCGCTGGCCGCGCCGGAATACGCGTCGGGGGTCACGCT
CGATGCGCTGGCGGCCCATCCACTCGTGCTGCGCGAGGCGGGCTCCGCCGTCAGGCAACTCGTCGAGCGCGCGTTCGCGC
AAGGCGCGGCGCCGATGCGCGTCGCGTTCGAGATCGCGGGCGTCGAGGCCGTCAAGGAAGCCGTGCGCGCCGGGATGGGC
GTCGGGTTCGTGTCCGCGATGTCGCTGCGTCACGACGATGCCGCGCTCGTCCTGCGCTCGCTCGCGCCCGCGCCGCTCAC
GCGTCATTTCTCCATCCTCGTGCCGCACGGCGGTGCGCCGTCGCGGGTTGCCGCCCAATTCCTCGAAATGAGCCTCGCGC
ACGACATCGCCTGA

Upstream 100 bases:

>100_bases
ATGGAGCGTGTTGCGATGGTGTAATCCTAATTTCGTTATATCGATATGAAAAATTGTGATTTGTGACGTAAACTATCCGG
AAAGCCGATAATTTATCCCC

Downstream 100 bases:

>100_bases
GCGGCCGAACCCGGCGCGGGAACGCGCGATGCGAGCCGTCGGATGCGCATGTGCGGCATGCCCCGTCTTAGGGATTTCCT
CTATGGCGTGGGTCTGACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTPDQLITFAAVAEHLNISHAAVALHLSQPAVSGQLRLLQDEFGEPLYQREGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPSAPRVAIHTMSGNTADVVAALPSLDIAMIEGPPGEALPPGTAVHA
WREDEIVAIVPTGHPLAAPEYASGVTLDALAAHPLVLREAGSAVRQLVERAFAQGAAPMRVAFEIAGVEAVKEAVRAGMG
VGFVSAMSLRHDDAALVLRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAHDIA

Sequences:

>Translated_297_residues
MTPDQLITFAAVAEHLNISHAAVALHLSQPAVSGQLRLLQDEFGEPLYQREGRGIRLTPVGEQLAQYAKAQRDTFAQARA
FRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPSAPRVAIHTMSGNTADVVAALPSLDIAMIEGPPGEALPPGTAVHA
WREDEIVAIVPTGHPLAAPEYASGVTLDALAAHPLVLREAGSAVRQLVERAFAQGAAPMRVAFEIAGVEAVKEAVRAGMG
VGFVSAMSLRHDDAALVLRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAHDIA
>Mature_296_residues
TPDQLITFAAVAEHLNISHAAVALHLSQPAVSGQLRLLQDEFGEPLYQREGRGIRLTPVGEQLAQYAKAQRDTFAQARAF
RDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPSAPRVAIHTMSGNTADVVAALPSLDIAMIEGPPGEALPPGTAVHAW
REDEIVAIVPTGHPLAAPEYASGVTLDALAAHPLVLREAGSAVRQLVERAFAQGAAPMRVAFEIAGVEAVKEAVRAGMGV
GFVSAMSLRHDDAALVLRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAHDIA

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=32.6666666666667, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788481, Length=248, Percent_Identity=33.8709677419355, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=28.5171102661597, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790399, Length=288, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=27.3092369477912, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787879, Length=193, Percent_Identity=31.6062176165803, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=28.968253968254, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=261, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787806, Length=249, Percent_Identity=26.1044176706827, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788626, Length=245, Percent_Identity=30.6122448979592, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789204, Length=272, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081904, Length=202, Percent_Identity=29.2079207920792, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31205; Mature: 31074

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHLNISHAAVALHLSQPAVSGQLRLLQDEFGEPLYQREGRGIRLTPV
CCHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHHHHHHHCCCHHHHCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPSAPRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AIHTMSGNTADVVAALPSLDIAMIEGPPGEALPPGTAVHAWREDEIVAIVPTGHPLAAPE
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCC
YASGVTLDALAAHPLVLREAGSAVRQLVERAFAQGAAPMRVAFEIAGVEAVKEAVRAGMG
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCC
VGFVSAMSLRHDDAALVLRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAHDIA
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPDQLITFAAVAEHLNISHAAVALHLSQPAVSGQLRLLQDEFGEPLYQREGRGIRLTPV
CHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHHHHHHHCCCHHHHCCCCEEECCC
GEQLAQYAKAQRDTFAQARAFRDAVRGLEAGTLRIGASTTPASYLLPYLIAAFQPSAPRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
AIHTMSGNTADVVAALPSLDIAMIEGPPGEALPPGTAVHAWREDEIVAIVPTGHPLAAPE
EEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCC
YASGVTLDALAAHPLVLREAGSAVRQLVERAFAQGAAPMRVAFEIAGVEAVKEAVRAGMG
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCC
VGFVSAMSLRHDDAALVLRSLAPAPLTRHFSILVPHGGAPSRVAAQFLEMSLAHDIA
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]