| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78066499
Identifier: 78066499
GI number: 78066499
Start: 2064300
End: 2065064
Strand: Reverse
Name: 78066499
Synonym: Bcep18194_A5030
Alternate gene names: NA
Gene position: 2065064-2064300 (Counterclockwise)
Preceding gene: 78066500
Following gene: 78066498
Centisome position: 55.9
GC content: 71.37
Gene sequence:
>765_bases ATGACAGACATCGTGATCGTGGCGAGCGCATTCGGGATGGACCGCGTGCGTCAGGAGGGCCACAGCGCATTCATCGCGAC CGCGGCGGCATCCGGTGCGACCGGTTTCGAGGTGCGGCGCGAACTGTTCGCGTCGGAAGCGGAAGCCGCGCCTGGCGCGC TGGCCGCGCTCGGCGCGCAACTGGCCAGCCACGGGCTGTGGTCGGTTTTTTCAACGCCGGCCAACCTGTACACGGACACC GGGGCACTCGATGCGGACGCATTGCGCAGCGCGCTCGCCGAAGCCGACGCGCTCGGCGCGCGCTTCGTGAAATTCCAGCT CGGGGGTTTTGCCGGCGACGCGCACGCGGCCGACATCGTCGCGCTGTCGCGCGGCGCCCGGGCCCGCGTGGTGGTCGAGA ACGGCCAGCTTCCGGTCGGCGGCGCGCTCGCGCAATTCCGTGGACTGTTCGAGGCGCTGGCCGCGGCGGGCATGCCCGAT GCACTCGGGATGACCTTCGACATCGGCAACTGGCAGTGGCCGGGCGAAGCGCCGCTTGATTGCGCGCAAGTCCTTGCGCC GCATGTGGAATACATTCATTGCAAGGCAGTCGCGGGCGAGGGTGCGCGCCGTTTCGCCGCTGCGCCGGCGCCGAACGACC CGCTCGTGACCGGCGTGCTCGCGGTGCTGCCGCAGCAGGCGCCGCGCGGCATCGAGTTCCCGTTCGACGCGGCCGACCTG GCGGGCGATGCGTGCCGGCGCGTCGCGTGGCTCGCCACCGCGTGA
Upstream 100 bases:
>100_bases CCCCGTCTTAGGGATTTCCTCTATGGCGTGGGTCTGACGCGAAGCGCACCATCCGTCTCAAGCAAATGGAACCGGTTCCA TTCCGGTGAAAAAGGGCAAA
Downstream 100 bases:
>100_bases CGGCGGAAGGATCCTGGAGAGTTCATTCATGAAAGCAGCACTCGATGTCGTGACCTACGGCGAAGCGATGGCGATGTTCG TCGCAACCGAACCCGGCCAT
Product: xylose isomerase-like TIM barrel
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; Epimerase; Epimerase KguE; Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase-Like TIM Barrel; Sugar Isomerase; Epimerase KguE-Like; Sugar Phosphate Isomerase/Epimerase; Sugar Or Sugar Phosphate Isomerase; Sugar Phosphate Isomerases/Epimerase
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTDIVIVASAFGMDRVRQEGHSAFIATAAASGATGFEVRRELFASEAEAAPGALAALGAQLASHGLWSVFSTPANLYTDT GALDADALRSALAEADALGARFVKFQLGGFAGDAHAADIVALSRGARARVVVENGQLPVGGALAQFRGLFEALAAAGMPD ALGMTFDIGNWQWPGEAPLDCAQVLAPHVEYIHCKAVAGEGARRFAAAPAPNDPLVTGVLAVLPQQAPRGIEFPFDAADL AGDACRRVAWLATA
Sequences:
>Translated_254_residues MTDIVIVASAFGMDRVRQEGHSAFIATAAASGATGFEVRRELFASEAEAAPGALAALGAQLASHGLWSVFSTPANLYTDT GALDADALRSALAEADALGARFVKFQLGGFAGDAHAADIVALSRGARARVVVENGQLPVGGALAQFRGLFEALAAAGMPD ALGMTFDIGNWQWPGEAPLDCAQVLAPHVEYIHCKAVAGEGARRFAAAPAPNDPLVTGVLAVLPQQAPRGIEFPFDAADL AGDACRRVAWLATA >Mature_253_residues TDIVIVASAFGMDRVRQEGHSAFIATAAASGATGFEVRRELFASEAEAAPGALAALGAQLASHGLWSVFSTPANLYTDTG ALDADALRSALAEADALGARFVKFQLGGFAGDAHAADIVALSRGARARVVVENGQLPVGGALAQFRGLFEALAAAGMPDA LGMTFDIGNWQWPGEAPLDCAQVLAPHVEYIHCKAVAGEGARRFAAAPAPNDPLVTGVLAVLPQQAPRGIEFPFDAADLA GDACRRVAWLATA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26080; Mature: 25948
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDIVIVASAFGMDRVRQEGHSAFIATAAASGATGFEVRRELFASEAEAAPGALAALGAQ CCCEEEEECHHCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH LASHGLWSVFSTPANLYTDTGALDADALRSALAEADALGARFVKFQLGGFAGDAHAADIV HHHCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHH ALSRGARARVVVENGQLPVGGALAQFRGLFEALAAAGMPDALGMTFDIGNWQWPGEAPLD HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCHH CAQVLAPHVEYIHCKAVAGEGARRFAAAPAPNDPLVTGVLAVLPQQAPRGIEFPFDAADL HHHHHHHHHHEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH AGDACRRVAWLATA HHHHHHHHHHHCCC >Mature Secondary Structure TDIVIVASAFGMDRVRQEGHSAFIATAAASGATGFEVRRELFASEAEAAPGALAALGAQ CCEEEEECHHCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH LASHGLWSVFSTPANLYTDTGALDADALRSALAEADALGARFVKFQLGGFAGDAHAADIV HHHCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHH ALSRGARARVVVENGQLPVGGALAQFRGLFEALAAAGMPDALGMTFDIGNWQWPGEAPLD HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCHH CAQVLAPHVEYIHCKAVAGEGARRFAAAPAPNDPLVTGVLAVLPQQAPRGIEFPFDAADL HHHHHHHHHHEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH AGDACRRVAWLATA HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA