| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is hifC [H]
Identifier: 78065866
GI number: 78065866
Start: 1353872
End: 1356256
Strand: Reverse
Name: hifC [H]
Synonym: Bcep18194_A4395
Alternate gene names: 78065866
Gene position: 1356256-1353872 (Counterclockwise)
Preceding gene: 78065867
Following gene: 78065865
Centisome position: 36.71
GC content: 70.44
Gene sequence:
>2385_bases GTGCGCCGCCCGGCCTCGCCCCCTTCGCCACGCGCCGGCAGGTTCCCGGCCAACGGACGCAAAACACCGCGCCGCTCGCC GCGCGCTGCGCTTGCGGCCATCGTGGCCGGCAGCCTGCTCGTGCTCGGCTCGGCCCGCGCGGACGAACCGGCTGCACTTG TGATGACCGACAGCACGCACGACGTGATCCTCGAAGTCAGCGTCAACGGCGAAAGCACCGCGCTGCTCGCACACTTCCGC GAACGCGACGGCCATCTGTCGGCAAGCGGCGCCGACCTGCGCACGATCGGCTTCGCCACCGACCGGCTCGGCATCGCCGA CGCGGCGACCGTCGACCTCGACACGATTCCCGGCCTGCACTACCGCTACGACGCGGCACATCAGAGCGTCGACCTGCAGA TGCCCGACACGCTGCGCCGGCCGTACGCGGTCGACAGCCGCGCGTTGCCGGCCACGCAAGAGGCCAGCGCGTCGCGCGGC GTCGCGATCAACTACGAGGCGTACGCGCAGACGATCGGCGACCGGCAGTTCTCGCTCTACACCGGCGTGCGCTACTTCGA CCCGAACGGCGTGTTCAACACGACGGGCACCGCGTATTTCTACAACGGCCAGCGGCGCTATACGCGCTTCGATACGTCGT GGAGCCGCTCGGACCCGGCACGGCCGAGTACGACGCAGATCGGCGACGCGATCTCGGGATCGCTCGCATGGACGCGCTCG GTGCGCCTCGGCGGCTTCCAGTGGCGCAGCAACTTCGCGCTGCGGCCCGATCTCGTGACGTTCCCGATTCCGTCGCTCGC CGGTTCTGCGGCCGTGCCGTCGGCGGTCGACCTGTACATCAACAACGTGCGCCAGTACACCGGCAACGTGCCGAGCGGCC CGTTCATCATCCACGACGTGCCGGGCATCACCGGTGCCGGCCAGGCGACCGTCATCACGCGCGATGCGCTCGGGCGCACC GTCGCGACGTCGGTGCCGCTCTACGTCGATACGCGCATGCTGTCCGCCGGGTTGTCGAGCTATTCGTTCGAAGCCGGCTT CCTGCGCCGCAACTACGGCGTGCAGTCGTTCGACTACGACGCGCGGCCGGCCGTCAGCGGCTCGATGCGGCGCGGCATCA CCGATGCGCTGACCGTCGAGGGGCATGCGGAAGCGACCGGCGGCGTGGTCAACGCCGGCGTCGGCGCGCTGCTGCGTCTC GGCTACGCGGGCGTCGTGAGCGGCGCGGTCGCGGGCAGCGCCGGCCGCTATCCGGGCACGCAGGTGAGCGTCGGCTACCA GGTGATCGAACCGCGCTTCTCGATCAACGCGCAGACGATCCGCGCATTCGGCCGCTACGGCGACCTCGCGTCGCGCGACG GCTCGCCGGTCCCGTCGGCGACCGACCAGGCCACGCTCGCGCTGCCGTTCATGCACCGCCAGACGCTGTCGCTCAGCTAT ATCGGCTTCCGGCTGCCGCAAGGCCCGAGCGCTCGGATCGGTACGGTGTCCTACACGCTGAGCTTCGGCGATCTCGCGTC GGTAAGCGTGAGCGCGTACCGCGACTTCGCGCAGCAGGGGGCGAACGGCGCGTTCGTGTCGCTGAACATCGGGCTCGGCC GCAACACGTCGATCAATGCGACCGTCGGCCGGCAGCGCGGCCAGTCGAACTACACCGTCGATGCGAGCCGCCCGCCCGAC TACGACGGCGGCTGGGGCTGGGGCGTGCAGACCGGCGGCACGGGCGCGGTGCCATACCGGCAGGCGCAACTGCGCTATCT CGGCCATGCCGGCGAAGTCATCGCGGCCGCGCAGAACATCGACCGCCAGACCGGCGCGTCGCTGGACGTCAGCGGCGCGC TCGTCTTCATGGACCGCAGCCTGCAGGTGTCGCGCCGCATCGACGACGGCTTCGCGCTCGTGTCGACCGACGGCGTCGCG GGCATTCCGGTGCTGCACGAGAACCGCGTGATCGGCACGACCGATCGCGCGGGGCACCTGCTCGTGCCCGACCTGAACGC ATACCAGAACAACCAGATCGCCATCGACTCGATGAAGCTGCCCGCCGATGCGCGGATCGCCCGCACGTCGATGACGGTCG TGCCGCAGGCGCAATCGGGCGTCGTCGCGCATTTCGGCGTGTCGCGCTATCGCGCGGCGTCGGTGATCCTGCGCGACGCC GACGGCCGCCCGCTGCCGGCCGGCGCGCACGTGCATCACGCGGAAAGCGGCGCGAACACGATCGTCGGGTACGACGGGCT CACGTTCATCGACGGACTGAAGGAGGACAACCACCTCGTGATCGATTACGGCACGCAGCGCTGCGCAGCGGAATTCGCGT TCACGGCGCCCGGCAACGGCACGCTGCCGACCATCGGCCCGCTCACCTGCCGGGCTGCGCCATGA
Upstream 100 bases:
>100_bases GCCGGCGTCACGCTCGGCGGCAAGGTCACGGTGCGGGCAGCCGTCAATTCGCAGCCGGCCAGCGCGGTCGTCGCGGTGGA GCCGCCGGGCTAGACCGCCG
Downstream 100 bases:
>100_bases GGTTCGCCCTGCTCCTCGTTGTCGCCTTCGCCATGTGGTGCGGCGTGCCGCACGATGCGCGGGCCGAGTCGTGCACGGCC ACCGCGTCGACGGTGAGCTT
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MRRPASPPSPRAGRFPANGRKTPRRSPRAALAAIVAGSLLVLGSARADEPAALVMTDSTHDVILEVSVNGESTALLAHFR ERDGHLSASGADLRTIGFATDRLGIADAATVDLDTIPGLHYRYDAAHQSVDLQMPDTLRRPYAVDSRALPATQEASASRG VAINYEAYAQTIGDRQFSLYTGVRYFDPNGVFNTTGTAYFYNGQRRYTRFDTSWSRSDPARPSTTQIGDAISGSLAWTRS VRLGGFQWRSNFALRPDLVTFPIPSLAGSAAVPSAVDLYINNVRQYTGNVPSGPFIIHDVPGITGAGQATVITRDALGRT VATSVPLYVDTRMLSAGLSSYSFEAGFLRRNYGVQSFDYDARPAVSGSMRRGITDALTVEGHAEATGGVVNAGVGALLRL GYAGVVSGAVAGSAGRYPGTQVSVGYQVIEPRFSINAQTIRAFGRYGDLASRDGSPVPSATDQATLALPFMHRQTLSLSY IGFRLPQGPSARIGTVSYTLSFGDLASVSVSAYRDFAQQGANGAFVSLNIGLGRNTSINATVGRQRGQSNYTVDASRPPD YDGGWGWGVQTGGTGAVPYRQAQLRYLGHAGEVIAAAQNIDRQTGASLDVSGALVFMDRSLQVSRRIDDGFALVSTDGVA GIPVLHENRVIGTTDRAGHLLVPDLNAYQNNQIAIDSMKLPADARIARTSMTVVPQAQSGVVAHFGVSRYRAASVILRDA DGRPLPAGAHVHHAESGANTIVGYDGLTFIDGLKEDNHLVIDYGTQRCAAEFAFTAPGNGTLPTIGPLTCRAAP
Sequences:
>Translated_794_residues MRRPASPPSPRAGRFPANGRKTPRRSPRAALAAIVAGSLLVLGSARADEPAALVMTDSTHDVILEVSVNGESTALLAHFR ERDGHLSASGADLRTIGFATDRLGIADAATVDLDTIPGLHYRYDAAHQSVDLQMPDTLRRPYAVDSRALPATQEASASRG VAINYEAYAQTIGDRQFSLYTGVRYFDPNGVFNTTGTAYFYNGQRRYTRFDTSWSRSDPARPSTTQIGDAISGSLAWTRS VRLGGFQWRSNFALRPDLVTFPIPSLAGSAAVPSAVDLYINNVRQYTGNVPSGPFIIHDVPGITGAGQATVITRDALGRT VATSVPLYVDTRMLSAGLSSYSFEAGFLRRNYGVQSFDYDARPAVSGSMRRGITDALTVEGHAEATGGVVNAGVGALLRL GYAGVVSGAVAGSAGRYPGTQVSVGYQVIEPRFSINAQTIRAFGRYGDLASRDGSPVPSATDQATLALPFMHRQTLSLSY IGFRLPQGPSARIGTVSYTLSFGDLASVSVSAYRDFAQQGANGAFVSLNIGLGRNTSINATVGRQRGQSNYTVDASRPPD YDGGWGWGVQTGGTGAVPYRQAQLRYLGHAGEVIAAAQNIDRQTGASLDVSGALVFMDRSLQVSRRIDDGFALVSTDGVA GIPVLHENRVIGTTDRAGHLLVPDLNAYQNNQIAIDSMKLPADARIARTSMTVVPQAQSGVVAHFGVSRYRAASVILRDA DGRPLPAGAHVHHAESGANTIVGYDGLTFIDGLKEDNHLVIDYGTQRCAAEFAFTAPGNGTLPTIGPLTCRAAP >Mature_794_residues MRRPASPPSPRAGRFPANGRKTPRRSPRAALAAIVAGSLLVLGSARADEPAALVMTDSTHDVILEVSVNGESTALLAHFR ERDGHLSASGADLRTIGFATDRLGIADAATVDLDTIPGLHYRYDAAHQSVDLQMPDTLRRPYAVDSRALPATQEASASRG VAINYEAYAQTIGDRQFSLYTGVRYFDPNGVFNTTGTAYFYNGQRRYTRFDTSWSRSDPARPSTTQIGDAISGSLAWTRS VRLGGFQWRSNFALRPDLVTFPIPSLAGSAAVPSAVDLYINNVRQYTGNVPSGPFIIHDVPGITGAGQATVITRDALGRT VATSVPLYVDTRMLSAGLSSYSFEAGFLRRNYGVQSFDYDARPAVSGSMRRGITDALTVEGHAEATGGVVNAGVGALLRL GYAGVVSGAVAGSAGRYPGTQVSVGYQVIEPRFSINAQTIRAFGRYGDLASRDGSPVPSATDQATLALPFMHRQTLSLSY IGFRLPQGPSARIGTVSYTLSFGDLASVSVSAYRDFAQQGANGAFVSLNIGLGRNTSINATVGRQRGQSNYTVDASRPPD YDGGWGWGVQTGGTGAVPYRQAQLRYLGHAGEVIAAAQNIDRQTGASLDVSGALVFMDRSLQVSRRIDDGFALVSTDGVA GIPVLHENRVIGTTDRAGHLLVPDLNAYQNNQIAIDSMKLPADARIARTSMTVVPQAQSGVVAHFGVSRYRAASVILRDA DGRPLPAGAHVHHAESGANTIVGYDGLTFIDGLKEDNHLVIDYGTQRCAAEFAFTAPGNGTLPTIGPLTCRAAP
Specific function: Essential for piliation [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789533, Length=172, Percent_Identity=28.4883720930233, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1786332, Length=744, Percent_Identity=22.4462365591398, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1786744, Length=185, Percent_Identity=24.8648648648649, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 84107; Mature: 84107
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRPASPPSPRAGRFPANGRKTPRRSPRAALAAIVAGSLLVLGSARADEPAALVMTDSTH CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCC DVILEVSVNGESTALLAHFRERDGHLSASGADLRTIGFATDRLGIADAATVDLDTIPGLH EEEEEEEECCCCEEEEEEHHHCCCCEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCE YRYDAAHQSVDLQMPDTLRRPYAVDSRALPATQEASASRGVAINYEAYAQTIGDRQFSLY EEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCEEEEE TGVRYFDPNGVFNTTGTAYFYNGQRRYTRFDTSWSRSDPARPSTTQIGDAISGSLAWTRS ECEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCHHHHCHHHCCCEEEEEE VRLGGFQWRSNFALRPDLVTFPIPSLAGSAAVPSAVDLYINNVRQYTGNVPSGPFIIHDV EEECCEEECCCCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC PGITGAGQATVITRDALGRTVATSVPLYVDTRMLSAGLSSYSFEAGFLRRNYGVQSFDYD CCCCCCCCEEEEEHHHCCCHHHHCCCEEEEHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC ARPAVSGSMRRGITDALTVEGHAEATGGVVNAGVGALLRLGYAGVVSGAVAGSAGRYPGT CCCCCCCHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC QVSVGYQVIEPRFSINAQTIRAFGRYGDLASRDGSPVPSATDQATLALPFMHRQTLSLSY EEEECEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHCCEEEEEE IGFRLPQGPSARIGTVSYTLSFGDLASVSVSAYRDFAQQGANGAFVSLNIGLGRNTSINA EEEECCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE TVGRQRGQSNYTVDASRPPDYDGGWGWGVQTGGTGAVPYRQAQLRYLGHAGEVIAAAQNI EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC DRQTGASLDVSGALVFMDRSLQVSRRIDDGFALVSTDGVAGIPVLHENRVIGTTDRAGHL CHHCCCCEECCEEEEEEECCEEEEECCCCCEEEEECCCCCCCEEEECCEEEECCCCCCEE LVPDLNAYQNNQIAIDSMKLPADARIARTSMTVVPQAQSGVVAHFGVSRYRAASVILRDA EECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCEEEECCCHHHEEEEEEEECC DGRPLPAGAHVHHAESGANTIVGYDGLTFIDGLKEDNHLVIDYGTQRCAAEFAFTAPGNG CCCCCCCCCEEEECCCCCCEEEECCCCHHHHCCCCCCEEEEECCCCCHHHEEEEECCCCC TLPTIGPLTCRAAP CCCCCCCEEECCCC >Mature Secondary Structure MRRPASPPSPRAGRFPANGRKTPRRSPRAALAAIVAGSLLVLGSARADEPAALVMTDSTH CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCC DVILEVSVNGESTALLAHFRERDGHLSASGADLRTIGFATDRLGIADAATVDLDTIPGLH EEEEEEEECCCCEEEEEEHHHCCCCEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCE YRYDAAHQSVDLQMPDTLRRPYAVDSRALPATQEASASRGVAINYEAYAQTIGDRQFSLY EEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCEEEEE TGVRYFDPNGVFNTTGTAYFYNGQRRYTRFDTSWSRSDPARPSTTQIGDAISGSLAWTRS ECEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCHHHHCHHHCCCEEEEEE VRLGGFQWRSNFALRPDLVTFPIPSLAGSAAVPSAVDLYINNVRQYTGNVPSGPFIIHDV EEECCEEECCCCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC PGITGAGQATVITRDALGRTVATSVPLYVDTRMLSAGLSSYSFEAGFLRRNYGVQSFDYD CCCCCCCCEEEEEHHHCCCHHHHCCCEEEEHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC ARPAVSGSMRRGITDALTVEGHAEATGGVVNAGVGALLRLGYAGVVSGAVAGSAGRYPGT CCCCCCCHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC QVSVGYQVIEPRFSINAQTIRAFGRYGDLASRDGSPVPSATDQATLALPFMHRQTLSLSY EEEECEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHCCEEEEEE IGFRLPQGPSARIGTVSYTLSFGDLASVSVSAYRDFAQQGANGAFVSLNIGLGRNTSINA EEEECCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEE TVGRQRGQSNYTVDASRPPDYDGGWGWGVQTGGTGAVPYRQAQLRYLGHAGEVIAAAQNI EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC DRQTGASLDVSGALVFMDRSLQVSRRIDDGFALVSTDGVAGIPVLHENRVIGTTDRAGHL CHHCCCCEECCEEEEEEECCEEEEECCCCCEEEEECCCCCCCEEEECCEEEECCCCCCEE LVPDLNAYQNNQIAIDSMKLPADARIARTSMTVVPQAQSGVVAHFGVSRYRAASVILRDA EECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCEEEECCCHHHEEEEEEEECC DGRPLPAGAHVHHAESGANTIVGYDGLTFIDGLKEDNHLVIDYGTQRCAAEFAFTAPGNG CCCCCCCCCEEEECCCCCCEEEECCCCHHHHCCCCCCEEEEECCCCCHHHEEEEECCCCC TLPTIGPLTCRAAP CCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7905461 [H]