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The map label for this gene is rimM

Identifier: 78065656

GI number: 78065656

Start: 1119965

End: 1120642

Strand: Direct

Name: rimM

Synonym: Bcep18194_A4184

Alternate gene names: 78065656

Gene position: 1119965-1120642 (Clockwise)

Preceding gene: 78065655

Following gene: 78065657

Centisome position: 30.32

GC content: 65.04

Gene sequence:

>678_bases
ATGGCGGGTCACGATTCCGGTAATGCAAGGCGCGGGCGTGCGTCGTTTGGCGCATTCGTCCGCAAGCCGGTCGAGCGCGA
CGCTGTCGCGAACGCCGGTCAGGCTGCCGAACAGGGCAGTCTCGAAGAGGCGCAAGCCTGGCCCGACGATGCCGTCGAGG
TCGGGGCGGTGGTCGACGCCTATGGCCTGAAGGGCTGGGTCAAGGTGGCGACGCACGCCGACGCCGGTCGCGGCGGCGAT
GCACTGCTCAAGGCGCGCCACTGGTGGCTGGAACGCGGTGCGGAGCGGCTTTCGGTCCGCATCATGCAGTCGAAGGCGCA
CAGCGACACCGTCGTTGCGCAACCCGCGGGCGTCAGCGACCGCGATGCCGCGTTCGCTATGCGCGGTTTTCGCGTGTTCG
TGCGCCGGGAAGATTTCCCGGCATTGGCCGCGGACGAATTCTATTGGGTCGACCTGATCGGTCTCGACGTCGTCAACGAG
CAATCGGTGGCACTCGGGAAGGTGAGCGGGATGATCGACAATGGCGTGCATTCGATCATGCGTGTCGAGTATCCGGCGAC
TGGTAAAGACGGTCAGCCGACCACCGACGAGCGGTTGATTCCGTTCGTCGGCGTATATGTCAAAACGGTGGATCAGGCGG
CGCGTCGCATCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
GTCGCCGACCGTCCAGCGTCTCGTGAAGGAAGCGCAAAAGGCGCAACCGGCTGCCTAACATGGCACGGTGTGCCGGTCGT
GCCGGCTTTGAGGTGCATTA

Downstream 100 bases:

>100_bases
AATGAACCAGGTTACCGAGAGCGCGGTGCAGTTCGACGTCGTCTCGCTCTTTCCCGAGATGTTCCGTGCACTGACCGACT
GGGGGATCACCAGCCGGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGD
ALLKARHWWLERGAERLSVRIMQSKAHSDTVVAQPAGVSDRDAAFAMRGFRVFVRREDFPALAADEFYWVDLIGLDVVNE
QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY

Sequences:

>Translated_225_residues
MAGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGD
ALLKARHWWLERGAERLSVRIMQSKAHSDTVVAQPAGVSDRDAAFAMRGFRVFVRREDFPALAADEFYWVDLIGLDVVNE
QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
>Mature_224_residues
AGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDA
LLKARHWWLERGAERLSVRIMQSKAHSDTVVAQPAGVSDRDAAFAMRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQ
SVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=183, Percent_Identity=30.0546448087432, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 24454; Mature: 24322

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWPDDAVEVGAVVDA
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHCCCCHHHHCCCCHHHHHHHHHHH
YGLKGWVKVATHADAGRGGDALLKARHWWLERGAERLSVRIMQSKAHSDTVVAQPAGVSD
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
RDAAFAMRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQSVALGKVSGMIDNGVHSIM
CHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHE
RVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
AGHDSGNARRGRASFGAFVRKPVERDAVANAGQAAEQGSLEEAQAWPDDAVEVGAVVDA
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHCCCCHHHHCCCCHHHHHHHHHHH
YGLKGWVKVATHADAGRGGDALLKARHWWLERGAERLSVRIMQSKAHSDTVVAQPAGVSD
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
RDAAFAMRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQSVALGKVSGMIDNGVHSIM
CHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHE
RVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA